Wall clock time and date at job start Mon Mar 30 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46898 * 2 1 4 4 N 1.35492 * 125.88817 * 275.02308 * 3 2 1 5 5 H 0.97000 * 125.02097 * 0.02562 * 4 3 2 6 6 N 1.39760 * 109.96614 * 180.02562 * 4 3 2 7 7 C 1.46500 * 125.56761 * 180.02562 * 6 4 3 8 8 C 1.34871 * 108.86920 * 359.97438 * 6 4 3 9 9 O 1.21639 * 126.68460 * 180.02562 * 8 6 4 10 10 C 1.39174 * 125.88625 * 94.72243 * 3 2 1 11 11 C 1.40957 * 126.84353 * 359.97438 * 10 3 2 12 12 H 1.08003 * 120.00449 * 333.46272 * 11 10 3 13 13 C 1.39762 * 119.99811 * 153.45373 * 11 10 3 14 14 N 1.31065 * 119.99907 * 341.68890 * 13 11 10 15 15 Si 1.86803 * 119.99725 * 161.68925 * 13 11 10 16 16 H 1.48499 * 109.47048 * 90.00229 * 15 13 11 17 17 H 1.48498 * 109.46833 * 209.99877 * 15 13 11 18 18 H 1.48489 * 109.47131 * 329.99970 * 15 13 11 19 19 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47280 * 300.00051 * 1 2 3 21 21 H 1.08995 * 109.47470 * 59.99801 * 1 2 3 22 22 H 1.09002 * 109.46631 * 120.00211 * 2 1 3 23 23 H 1.09000 * 109.46775 * 240.00047 * 2 1 3 24 24 H 1.08994 * 109.46925 * 89.99629 * 7 6 4 25 25 H 1.08993 * 109.47318 * 210.00028 * 7 6 4 26 26 H 1.09005 * 109.47160 * 330.00224 * 7 6 4 27 27 H 0.96996 * 119.99799 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2064 2.2017 -1.0935 5 1 2.0247 1.9295 -2.0066 6 7 2.6866 3.4575 -0.7116 7 6 2.9930 4.5650 -1.6203 8 6 2.8207 3.4836 0.6302 9 8 3.2135 4.4176 1.3031 10 6 2.3917 2.1591 1.1237 11 6 2.3563 1.7278 2.4652 12 1 1.6643 0.9550 2.7660 13 6 3.2168 2.3000 3.4062 14 7 4.2798 2.9555 3.0087 15 14 2.8516 2.1305 5.2303 16 1 3.5000 0.9010 5.7528 17 1 3.3812 3.3147 5.9532 18 1 1.3836 2.0412 5.4351 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 2.1040 5.1810 -1.7550 25 1 3.7942 5.1709 -1.1973 26 1 3.3087 4.1670 -2.5847 27 1 4.8768 3.3530 3.6618 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261000080.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:08 Heat of formation + Delta-G solvation = 33.223842 kcal Electronic energy + Delta-G solvation = -12580.677608 eV Core-core repulsion = 10340.821379 eV Total energy + Delta-G solvation = -2239.856229 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.40672 -35.46947 -33.81903 -32.54736 -30.50872 -28.70977 -26.12729 -24.53704 -22.26604 -19.44959 -18.69047 -17.23284 -15.62131 -14.76663 -14.52519 -14.12238 -13.76672 -13.21613 -12.56255 -12.49075 -12.21529 -11.99252 -11.57600 -11.09761 -10.94691 -10.65136 -10.41484 -10.33417 -10.27423 -9.87981 -8.77557 -8.02916 -7.57863 -6.48719 -6.14164 -3.65180 3.13073 3.17755 3.33806 3.37971 3.48736 4.31343 4.77180 5.19446 5.61115 5.72737 5.85320 5.87562 5.92708 6.06358 6.22037 6.44116 6.55699 6.81034 6.97128 7.18936 7.55327 7.61693 7.76567 8.56417 8.93303 9.04566 9.29168 9.40948 10.01433 10.74596 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.031367 B = 0.016166 C = 0.011282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.454587 B = 1731.625656 C = 2481.192035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.018 4.018 3 C -0.074 4.074 4 N -0.530 5.530 5 H 0.409 0.591 6 N -0.437 5.437 7 C 0.111 3.889 8 C 0.527 3.473 9 O -0.531 6.531 10 C -0.036 4.036 11 C -0.445 4.445 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.775 5.775 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.266 1.266 19 H 0.041 0.959 20 H 0.057 0.943 21 H 0.041 0.959 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 -2.773 -6.727 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.057 4.057 3 C -0.178 4.178 4 N -0.262 5.262 5 H 0.249 0.751 6 N -0.262 5.262 7 C -0.032 4.032 8 C 0.321 3.679 9 O -0.406 6.406 10 C -0.048 4.048 11 C -0.478 4.478 12 H 0.093 0.907 13 C -0.143 4.143 14 N -0.400 5.400 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.190 1.190 19 H 0.060 0.940 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.141 -1.916 -6.336 7.327 hybrid contribution -0.182 0.027 0.179 0.257 sum -3.323 -1.889 -6.157 7.248 Atomic orbital electron populations 1.21799 0.97045 0.99735 1.01612 1.19541 0.93874 0.91075 1.01192 1.20126 1.19455 0.93038 0.85175 1.42167 1.74102 1.03415 1.06506 0.75096 1.47925 1.65850 1.04610 1.07788 1.21441 1.00663 0.88065 0.92994 1.19246 0.79680 0.90448 0.78483 1.90658 1.49670 1.41172 1.59102 1.18876 1.02805 0.90458 0.92646 1.18305 1.18154 1.20078 0.91233 0.90737 1.25680 0.94143 0.94213 1.00294 1.69914 1.08724 1.25546 1.35836 0.86519 0.79542 0.77866 0.83783 1.20162 1.20712 1.19020 0.93963 0.92380 0.93986 0.90358 0.93644 0.93519 0.90171 0.92146 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.16 0.37 -1.98 15 2 C -0.02 -0.33 6.33 -27.88 -0.18 -0.50 15 3 C -0.07 -1.70 6.58 -80.63 -0.53 -2.23 15 4 N -0.53 -10.94 7.10 34.27 0.24 -10.69 15 5 H 0.41 6.68 8.96 -182.85 -1.64 5.05 15 6 N -0.44 -10.01 3.99 -68.05 -0.27 -10.29 15 7 C 0.11 1.92 11.35 59.85 0.68 2.60 15 8 C 0.53 14.94 7.66 -12.35 -0.09 14.84 15 9 O -0.53 -16.63 15.45 5.24 0.08 -16.55 15 10 C -0.04 -1.01 5.80 -104.65 -0.61 -1.62 15 11 C -0.44 -12.62 8.84 -37.98 -0.34 -12.95 15 12 H 0.07 1.99 7.89 -52.48 -0.41 1.57 15 13 C 0.08 2.12 5.20 -17.31 -0.09 2.03 15 14 N -0.77 -23.23 10.82 55.54 0.60 -22.63 15 15 Si 0.90 20.95 29.60 -169.99 -5.03 15.92 15 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.08 1.53 7.82 -51.93 -0.41 1.12 15 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.08 1.43 8.08 -51.93 -0.42 1.02 15 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.27 7.61 8.30 -40.82 -0.34 7.27 15 LS Contribution 239.84 15.07 3.61 3.61 Total: -1.00 -33.96 239.84 -6.10 -40.06 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.55 Total: 0.37 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.79 Total: 0.20 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.57 Total: -43.61 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.08 Total: -16.55 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.96 -6.10 -40.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000080.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.285 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds