Wall clock time and date at job start Mon Mar 30 2020 02:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30175 * 126.80073 * 2 1 4 4 O 1.20924 * 111.60237 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.57151 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.77895 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47188 * 195.02616 * 6 5 4 8 8 N 1.46905 * 109.47125 * 315.02395 * 6 5 4 9 9 C 1.50703 * 109.47094 * 75.02322 * 6 5 4 10 10 H 1.08000 * 119.99934 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99701 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00608 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99602 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47056 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47251 * 120.00186 * 13 11 9 16 16 H 1.48503 * 109.46573 * 239.99823 * 13 11 9 17 17 C 1.35452 * 106.44349 * 0.24078 * 5 4 3 18 18 C 1.50695 * 128.00858 * 179.73916 * 17 5 4 19 19 H 1.09005 * 109.47466 * 89.97855 * 1 2 3 20 20 H 1.09002 * 109.47173 * 209.97502 * 1 2 3 21 21 H 1.08999 * 109.47292 * 329.97505 * 1 2 3 22 22 H 1.00901 * 110.99869 * 296.04907 * 8 6 5 23 23 H 1.00896 * 110.99543 * 60.00030 * 8 6 5 24 24 H 0.96991 * 120.00497 * 180.02562 * 12 11 9 25 25 H 1.08997 * 109.47023 * 89.99569 * 18 17 5 26 26 H 1.09001 * 109.47458 * 209.99729 * 18 17 5 27 27 H 1.09001 * 109.46873 * 329.99866 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 -0.0015 6 6 4.9022 -1.3695 -0.0029 7 1 4.7130 -2.4092 -0.2698 8 7 5.8197 -0.7717 -0.9821 9 6 5.5222 -1.3080 1.3693 10 1 5.0246 -0.7707 2.1631 11 6 6.7241 -1.9385 1.6116 12 7 7.3299 -2.5932 0.6451 13 14 7.4923 -1.8628 3.3127 14 1 6.6192 -1.0702 4.2152 15 1 7.6414 -3.2390 3.8502 16 1 8.8274 -1.2185 3.2246 17 6 2.3539 -1.1321 -0.0070 18 6 1.9591 -2.5863 -0.0157 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3634 0.8897 0.5142 22 1 5.4553 -0.8585 -1.9190 23 1 6.0109 0.1929 -0.7563 24 1 8.1752 -3.0371 0.8156 25 1 1.8617 -2.9425 1.0099 26 1 1.0060 -2.7011 -0.5321 27 1 2.7239 -3.1674 -0.5310 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261034976.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:49 Heat of formation + Delta-G solvation = 47.052590 kcal Electronic energy + Delta-G solvation = -12412.420930 eV Core-core repulsion = 10173.164360 eV Total energy + Delta-G solvation = -2239.256569 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.11586 -35.22947 -34.52903 -31.98802 -30.68820 -28.27662 -27.37803 -26.03636 -22.63854 -20.99029 -19.10026 -17.07942 -16.34089 -16.01405 -14.64679 -14.41158 -13.67853 -13.27642 -13.17810 -12.69112 -12.55408 -12.27728 -12.24021 -11.81921 -11.35638 -10.90089 -10.78265 -10.36917 -10.08982 -9.43879 -9.22008 -8.53925 -8.24171 -7.33848 -5.99811 -4.15902 2.29521 2.85650 3.29311 3.37822 3.42624 4.01799 4.41862 4.73787 5.07859 5.26898 5.51082 5.65202 5.69295 5.84749 6.03805 6.05708 6.19740 6.29578 6.43734 6.48996 6.87580 7.17070 7.79794 7.95506 8.43449 8.84689 8.93470 9.05007 9.53516 11.04615 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.048246 B = 0.010525 C = 0.010396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.218210 B = 2659.661067 C = 2692.602573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.008 3.992 3 N -0.392 5.392 4 O 0.087 5.913 5 C -0.006 4.006 6 C 0.297 3.703 7 H 0.073 0.927 8 N -0.807 5.807 9 C -0.538 4.538 10 H 0.057 0.943 11 C 0.087 3.913 12 N -0.845 5.845 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.239 4.239 18 C -0.063 4.063 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.302 0.698 23 H 0.327 0.673 24 H 0.259 0.741 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 0.593 -1.805 9.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.151 4.151 3 N -0.101 5.101 4 O 0.026 5.974 5 C -0.072 4.072 6 C 0.185 3.815 7 H 0.091 0.909 8 N -0.332 5.332 9 C -0.577 4.577 10 H 0.075 0.925 11 C -0.121 4.121 12 N -0.479 5.479 13 Si 0.718 3.282 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.245 4.245 18 C -0.120 4.120 19 H 0.090 0.910 20 H 0.094 0.906 21 H 0.088 0.912 22 H 0.113 0.887 23 H 0.139 0.861 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.498 1.250 -1.627 8.742 hybrid contribution -0.451 -0.058 0.762 0.887 sum -8.949 1.193 -0.865 9.069 Atomic orbital electron populations 1.20029 0.87002 1.02975 1.02467 1.23356 0.98232 0.89441 1.04075 1.73730 0.89995 1.24531 1.21840 1.84723 1.20771 1.23964 1.67896 1.27171 1.01415 0.82540 0.96084 1.18143 0.77978 0.91550 0.93806 0.90927 1.59114 1.48926 1.22366 1.02770 1.20789 1.06994 1.36406 0.93490 0.92507 1.24899 0.96429 0.94251 0.96481 1.70089 1.15773 1.31099 1.30922 0.86582 0.79358 0.77784 0.84503 1.19801 1.20899 1.20794 1.20951 0.91905 0.97468 1.14131 1.19931 1.00776 0.89286 1.02013 0.90953 0.90579 0.91240 0.88749 0.86074 0.93146 0.91580 0.92418 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.39 36.00 0.37 -0.53 15 2 C 0.01 0.15 7.33 -82.10 -0.60 -0.45 15 3 N -0.39 -8.29 12.07 33.42 0.40 -7.89 15 4 O 0.09 1.95 11.19 17.17 0.19 2.14 15 5 C -0.01 -0.13 6.22 -35.30 -0.22 -0.35 15 6 C 0.30 7.18 3.04 -70.01 -0.21 6.97 15 7 H 0.07 1.84 7.12 -51.93 -0.37 1.47 15 8 N -0.81 -18.63 8.53 -6.65 -0.06 -18.69 15 9 C -0.54 -14.56 8.71 -34.44 -0.30 -14.86 15 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 11 C 0.09 2.36 5.39 -17.82 -0.10 2.27 15 12 N -0.84 -23.68 12.77 55.43 0.71 -22.97 15 13 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 15 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 15 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 17 C -0.24 -4.70 6.32 -104.42 -0.66 -5.36 15 18 C -0.06 -1.01 10.15 36.00 0.37 -0.64 15 19 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.30 6.18 9.06 -39.29 -0.36 5.83 15 23 H 0.33 7.40 8.98 -39.29 -0.35 7.05 15 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 27 H 0.07 1.15 7.28 -51.93 -0.38 0.77 15 LS Contribution 242.18 15.07 3.65 3.65 Total: -1.00 -29.48 242.18 -4.59 -34.07 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.11 Total: 6.72 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.35 Total: -12.96 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 1.05 Total: -49.55 kcal Atomic # 8 Polarization: 1.95 SS G_CDS: 0.19 Total: 2.14 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.48 -4.59 -34.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034976.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.122 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds