Wall clock time and date at job start Mon Mar 30 2020 02:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30175 * 126.80073 * 2 1 4 4 O 1.20924 * 111.60237 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.57151 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.77895 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47188 * 195.02616 * 6 5 4 8 8 N 1.46905 * 109.47125 * 315.02395 * 6 5 4 9 9 C 1.50703 * 109.47094 * 75.02322 * 6 5 4 10 10 H 1.08000 * 119.99934 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99701 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00608 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99602 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47056 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47251 * 120.00186 * 13 11 9 16 16 H 1.48503 * 109.46573 * 239.99823 * 13 11 9 17 17 C 1.35452 * 106.44349 * 0.24078 * 5 4 3 18 18 C 1.50695 * 128.00858 * 179.73916 * 17 5 4 19 19 H 1.09005 * 109.47466 * 89.97855 * 1 2 3 20 20 H 1.09002 * 109.47173 * 209.97502 * 1 2 3 21 21 H 1.08999 * 109.47292 * 329.97505 * 1 2 3 22 22 H 1.00901 * 110.99869 * 296.04907 * 8 6 5 23 23 H 1.00896 * 110.99543 * 60.00030 * 8 6 5 24 24 H 0.96991 * 120.00497 * 180.02562 * 12 11 9 25 25 H 1.08997 * 109.47023 * 89.99569 * 18 17 5 26 26 H 1.09001 * 109.47458 * 209.99729 * 18 17 5 27 27 H 1.09001 * 109.46873 * 329.99866 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 -0.0015 6 6 4.9022 -1.3695 -0.0029 7 1 4.7130 -2.4092 -0.2698 8 7 5.8197 -0.7717 -0.9821 9 6 5.5222 -1.3080 1.3693 10 1 5.0246 -0.7707 2.1631 11 6 6.7241 -1.9385 1.6116 12 7 7.3299 -2.5932 0.6451 13 14 7.4923 -1.8628 3.3127 14 1 6.6192 -1.0702 4.2152 15 1 7.6414 -3.2390 3.8502 16 1 8.8274 -1.2185 3.2246 17 6 2.3539 -1.1321 -0.0070 18 6 1.9591 -2.5863 -0.0157 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3634 0.8897 0.5142 22 1 5.4553 -0.8585 -1.9190 23 1 6.0109 0.1929 -0.7563 24 1 8.1752 -3.0371 0.8156 25 1 1.8617 -2.9425 1.0099 26 1 1.0060 -2.7011 -0.5321 27 1 2.7239 -3.1674 -0.5310 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034976.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:48 Heat of formation + Delta-G solvation = 26.446501 kcal Electronic energy + Delta-G solvation = -12413.314477 eV Core-core repulsion = 10173.164360 eV Total energy + Delta-G solvation = -2240.150116 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.68333 -37.01761 -36.06366 -33.90555 -32.33629 -29.56120 -28.88737 -27.95776 -24.50149 -22.49173 -20.70811 -18.86730 -18.10894 -17.74272 -16.53514 -16.26846 -15.30254 -14.76820 -14.38685 -14.32525 -13.84463 -13.80833 -13.51934 -13.35888 -13.00290 -12.74859 -12.66251 -12.04494 -11.87205 -11.41289 -10.71744 -10.60769 -9.90184 -9.15856 -8.06372 -6.28960 0.65257 1.36181 1.42552 1.46225 1.56128 2.36241 2.45814 3.19108 3.38670 3.70257 4.10772 4.28078 4.39907 4.60913 4.68977 4.81319 4.85661 4.90020 5.03391 5.13020 5.30800 5.48454 5.67728 5.97227 6.49015 6.91462 7.08895 7.41103 7.43858 8.97579 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.048246 B = 0.010525 C = 0.010396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.218210 B = 2659.661067 C = 2692.602573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.017 3.983 3 N -0.412 5.412 4 O 0.061 5.939 5 C -0.035 4.035 6 C 0.304 3.696 7 H 0.057 0.943 8 N -0.815 5.815 9 C -0.555 4.555 10 H 0.040 0.960 11 C 0.046 3.954 12 N -0.872 5.872 13 Si 0.952 3.048 14 H -0.277 1.277 15 H -0.274 1.274 16 H -0.279 1.279 17 C -0.236 4.236 18 C -0.063 4.063 19 H 0.096 0.904 20 H 0.100 0.900 21 H 0.078 0.922 22 H 0.316 0.684 23 H 0.327 0.673 24 H 0.261 0.739 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 0.201 -1.509 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.142 4.142 3 N -0.125 5.125 4 O 0.004 5.996 5 C -0.101 4.101 6 C 0.193 3.807 7 H 0.075 0.925 8 N -0.341 5.341 9 C -0.594 4.594 10 H 0.059 0.941 11 C -0.160 4.160 12 N -0.506 5.506 13 Si 0.777 3.223 14 H -0.201 1.201 15 H -0.199 1.199 16 H -0.205 1.205 17 C -0.241 4.241 18 C -0.120 4.120 19 H 0.114 0.886 20 H 0.119 0.881 21 H 0.096 0.904 22 H 0.128 0.872 23 H 0.139 0.861 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.974 0.849 -1.337 10.099 hybrid contribution -0.084 0.077 0.635 0.645 sum -10.059 0.926 -0.702 10.126 Atomic orbital electron populations 1.20293 0.83010 1.04673 1.04500 1.24179 1.00537 0.88187 1.01333 1.73723 0.89863 1.25675 1.23275 1.84683 1.21714 1.24030 1.69165 1.26832 1.01651 0.82931 0.98662 1.17730 0.79056 0.91211 0.92743 0.92506 1.58975 1.49279 1.22296 1.03518 1.20989 1.07489 1.36320 0.94573 0.94143 1.25557 0.96758 0.93875 0.99768 1.70175 1.16128 1.31734 1.32597 0.85638 0.78267 0.78005 0.80386 1.20141 1.19890 1.20465 1.21494 0.91100 0.99452 1.12012 1.20067 1.02357 0.86736 1.02840 0.88578 0.88109 0.90359 0.87198 0.86058 0.92963 0.90959 0.88692 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.39 71.23 0.74 -0.82 15 2 C 0.02 0.61 7.33 43.58 0.32 0.93 15 3 N -0.41 -17.16 12.07 -49.56 -0.60 -17.76 15 4 O 0.06 2.75 11.19 71.60 0.80 3.55 15 5 C -0.04 -1.56 6.22 25.04 0.16 -1.41 15 6 C 0.30 14.99 3.04 43.42 0.13 15.13 15 7 H 0.06 2.95 7.12 -2.39 -0.02 2.94 15 8 N -0.81 -38.28 8.53 -174.95 -1.49 -39.77 15 9 C -0.56 -30.52 8.71 25.60 0.22 -30.30 15 10 H 0.04 2.30 7.74 -2.91 -0.02 2.28 15 11 C 0.05 2.48 5.39 84.65 0.46 2.94 15 12 N -0.87 -49.08 12.77 21.45 0.27 -48.80 15 13 Si 0.95 43.16 29.54 68.60 2.03 45.18 15 14 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 17 C -0.24 -8.93 6.32 -19.73 -0.12 -9.06 15 18 C -0.06 -1.88 10.15 71.23 0.72 -1.16 15 19 H 0.10 1.82 8.14 -2.38 -0.02 1.80 15 20 H 0.10 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.32 13.12 9.06 -89.69 -0.81 12.31 15 23 H 0.33 15.18 8.98 -89.70 -0.81 14.38 15 24 H 0.26 13.93 8.31 -92.71 -0.77 13.16 15 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.06 1.97 7.28 -2.39 -0.02 1.96 15 Total: -1.00 -62.86 242.18 3.21 -59.65 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.42 Total: 21.68 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 2.63 Total: -23.73 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -1.82 Total: -106.33 kcal Atomic # 8 Polarization: 2.75 SS G_CDS: 0.80 Total: 3.55 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -62.86 3.21 -59.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034976.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.097 kcal (2) G-P(sol) polarization free energy of solvation -62.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds