Wall clock time and date at job start Mon Mar 30 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41384 * 128.00389 * 2 1 4 4 N 1.30170 * 106.39121 * 179.97438 * 3 2 1 5 5 O 1.20922 * 111.60876 * 359.72967 * 4 3 2 6 6 C 1.34035 * 111.56459 * 0.44273 * 5 4 3 7 7 C 1.50697 * 126.77754 * 179.82943 * 6 5 4 8 8 H 1.09002 * 109.47489 * 179.69047 * 7 6 5 9 9 C 1.50703 * 109.47085 * 299.69202 * 7 6 5 10 10 H 1.08000 * 120.00226 * 359.97438 * 9 7 6 11 11 C 1.37876 * 119.99741 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00557 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 119.99840 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47313 * 89.99891 * 13 11 9 15 15 H 1.48505 * 109.47144 * 209.99766 * 13 11 9 16 16 H 1.48506 * 109.47053 * 329.99795 * 13 11 9 17 17 C 1.53000 * 109.47204 * 59.68837 * 7 6 5 18 18 N 1.46901 * 109.46769 * 64.99941 * 17 7 6 19 19 H 1.09008 * 109.46869 * 269.99427 * 1 2 3 20 20 H 1.08998 * 109.47307 * 29.99696 * 1 2 3 21 21 H 1.09000 * 109.46727 * 150.00494 * 1 2 3 22 22 H 1.08000 * 126.80197 * 359.96348 * 3 2 1 23 23 H 0.96999 * 120.00539 * 180.02562 * 12 11 9 24 24 H 1.09002 * 109.47398 * 185.00236 * 17 7 6 25 25 H 1.09001 * 109.47194 * 305.00417 * 17 7 6 26 26 H 1.00908 * 110.99847 * 180.02562 * 18 17 7 27 27 H 1.00899 * 111.00283 * 303.95539 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3776 1.1141 0.0000 4 7 3.5878 0.6346 0.0006 5 8 3.5877 -0.5746 0.0062 6 6 2.3412 -1.0672 0.0006 7 6 1.9457 -2.5213 0.0013 8 1 0.8586 -2.6023 0.0013 9 6 2.4994 -3.1931 -1.2289 10 1 3.0794 -2.6239 -1.9402 11 6 2.2647 -4.5342 -1.4466 12 7 1.5581 -5.2273 -0.5807 13 14 2.9505 -5.3667 -2.9718 14 1 4.3023 -5.9057 -2.6761 15 1 2.0520 -6.4780 -3.3755 16 1 3.0425 -4.3783 -4.0763 17 6 2.5078 -3.2022 1.2508 18 7 1.8776 -2.6275 2.4469 19 1 -0.3633 -0.0001 1.0278 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3633 -0.8901 -0.5138 22 1 2.0945 2.1563 -0.0006 23 1 1.3933 -6.1709 -0.7338 24 1 2.2982 -4.2710 1.2077 25 1 3.5854 -3.0448 1.2967 26 1 2.2328 -3.0606 3.2862 27 1 2.0028 -1.6267 2.4761 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261037553.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:53 Heat of formation + Delta-G solvation = 27.700756 kcal Electronic energy + Delta-G solvation = -12575.952243 eV Core-core repulsion = 10335.856515 eV Total energy + Delta-G solvation = -2240.095728 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.64956 -37.52498 -35.36825 -34.23866 -32.97989 -30.33686 -28.39669 -25.98133 -24.08567 -22.70318 -21.16799 -18.88749 -18.09772 -17.58094 -16.78051 -16.19445 -15.69351 -15.34352 -14.60900 -14.03036 -13.98742 -13.79633 -13.38228 -13.00057 -12.74079 -12.50412 -12.37489 -11.96706 -11.69452 -11.46064 -11.09606 -10.60484 -9.77018 -9.43061 -8.17785 -6.34474 0.72110 1.42423 1.43758 1.49030 1.54655 2.40250 2.43815 3.08647 3.57710 3.91814 3.98367 4.15928 4.52082 4.64408 4.83740 4.92053 4.92286 5.04853 5.14678 5.42990 5.49401 5.67019 5.77513 6.11899 6.41105 6.64562 6.78145 7.34403 7.43184 8.85781 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037655 B = 0.012744 C = 0.011543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.407813 B = 2196.546512 C = 2425.162999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.235 4.235 3 C 0.005 3.995 4 N -0.411 5.411 5 O 0.057 5.943 6 C 0.006 3.994 7 C 0.127 3.873 8 H 0.052 0.948 9 C -0.543 4.543 10 H 0.046 0.954 11 C 0.028 3.972 12 N -0.902 5.902 13 Si 0.957 3.043 14 H -0.274 1.274 15 H -0.276 1.276 16 H -0.274 1.274 17 C 0.075 3.925 18 N -0.844 5.844 19 H 0.080 0.920 20 H 0.091 0.909 21 H 0.054 0.946 22 H 0.224 0.776 23 H 0.268 0.732 24 H 0.090 0.910 25 H -0.006 1.006 26 H 0.341 0.659 27 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 7.078 2.253 7.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.239 4.239 3 C -0.174 4.174 4 N -0.122 5.122 5 O 0.000 6.000 6 C -0.057 4.057 7 C 0.107 3.893 8 H 0.070 0.930 9 C -0.582 4.582 10 H 0.065 0.935 11 C -0.173 4.173 12 N -0.540 5.540 13 Si 0.782 3.218 14 H -0.200 1.200 15 H -0.201 1.201 16 H -0.199 1.199 17 C -0.055 4.055 18 N -0.373 5.373 19 H 0.098 0.902 20 H 0.110 0.890 21 H 0.073 0.927 22 H 0.241 0.759 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.013 0.987 26 H 0.153 0.847 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.242 7.107 1.980 7.481 hybrid contribution 0.678 -0.416 -0.532 0.957 sum -0.564 6.691 1.449 6.869 Atomic orbital electron populations 1.20054 0.85872 1.03039 1.03030 1.21525 0.99779 0.90812 1.11806 1.25418 0.87592 1.02835 1.01563 1.73795 1.24555 0.91627 1.22202 1.84728 1.30481 1.15838 1.68981 1.25268 0.82717 0.99505 0.98245 1.17441 0.96858 0.80845 0.94114 0.93045 1.21176 1.35108 0.95243 1.06626 0.93541 1.25610 0.94814 0.97507 0.99371 1.69952 1.38771 1.08916 1.36337 0.85574 0.78472 0.78139 0.79621 1.19978 1.20074 1.19891 1.21801 0.92845 1.01849 0.89045 1.58846 1.65219 1.08391 1.04862 0.90172 0.89017 0.92724 0.75936 0.92226 0.89199 0.98749 0.84714 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.85 10.15 71.24 0.72 -1.12 15 2 C -0.23 -8.56 6.32 -19.73 -0.12 -8.68 15 3 C 0.00 0.16 12.16 85.71 1.04 1.20 15 4 N -0.41 -16.48 12.07 -59.26 -0.72 -17.20 15 5 O 0.06 2.55 11.20 71.68 0.80 3.35 15 6 C 0.01 0.25 4.96 25.04 0.12 0.38 15 7 C 0.13 6.27 2.38 -12.29 -0.03 6.24 15 8 H 0.05 2.72 7.10 -2.39 -0.02 2.70 15 9 C -0.54 -29.54 8.55 25.60 0.22 -29.32 15 10 H 0.05 2.60 7.74 -2.91 -0.02 2.57 15 11 C 0.03 1.49 5.29 84.65 0.45 1.94 15 12 N -0.90 -49.16 11.29 21.45 0.24 -48.92 15 13 Si 0.96 42.45 29.54 68.60 2.03 44.48 15 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 15 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 17 C 0.08 3.54 6.07 86.30 0.52 4.07 15 18 N -0.84 -32.65 9.62 -186.71 -1.80 -34.45 15 19 H 0.08 2.11 8.14 -2.38 -0.02 2.09 15 20 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.05 1.82 7.40 -2.39 -0.02 1.80 15 22 H 0.22 5.06 8.06 -2.91 -0.02 5.04 15 23 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 24 H 0.09 4.70 5.95 -2.39 -0.01 4.69 15 25 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 15 26 H 0.34 11.33 9.08 -89.69 -0.81 10.52 15 27 H 0.33 12.00 8.07 -89.69 -0.72 11.28 15 Total: -1.00 -59.38 237.08 3.15 -56.24 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.34 Total: 21.80 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 2.93 Total: -25.30 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -2.27 Total: -100.57 kcal Atomic # 8 Polarization: 2.55 SS G_CDS: 0.80 Total: 3.35 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -59.38 3.15 -56.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037553.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.938 kcal (2) G-P(sol) polarization free energy of solvation -59.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds