Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34083 * 126.35902 * 2 1 4 4 N 1.34727 * 107.79013 * 179.78006 * 3 2 1 5 5 C 1.31056 * 108.60375 * 0.42355 * 4 3 2 6 6 N 1.38163 * 125.71058 * 179.83270 * 5 4 3 7 7 C 1.46499 * 120.00070 * 359.70316 * 6 5 4 8 8 C 1.53000 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46999 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46979 * 120.00420 * 13 11 9 16 16 H 1.48498 * 109.46942 * 240.00334 * 13 11 9 17 17 O 1.34212 * 108.57280 * 359.57786 * 5 4 3 18 18 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47221 * 299.98409 * 1 2 3 20 20 H 1.09005 * 109.46712 * 59.98252 * 1 2 3 21 21 H 1.08002 * 126.10873 * 0.04112 * 3 2 1 22 22 H 0.97000 * 119.99510 * 179.69318 * 6 5 4 23 23 H 1.09002 * 109.47391 * 59.99444 * 7 6 5 24 24 H 1.09001 * 109.46813 * 299.99500 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 26 26 H 1.08992 * 109.47399 * 59.99666 * 8 7 6 27 27 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3020 1.0798 0.0000 4 7 3.5791 0.6508 0.0049 5 6 3.5799 -0.6598 -0.0013 6 7 4.7023 -1.4655 -0.0022 7 6 6.0372 -0.8621 -0.0026 8 6 7.0961 -1.9665 -0.0031 9 6 8.4693 -1.3457 -0.0040 10 1 8.5761 -0.2710 -0.0039 11 6 9.5893 -2.1498 -0.0041 12 7 9.4593 -3.4585 -0.0037 13 14 11.2915 -1.3804 -0.0060 14 1 11.1659 0.0993 -0.0067 15 1 12.0318 -1.8133 1.2064 16 1 12.0300 -1.8155 -1.2187 17 8 2.3080 -1.0881 -0.0009 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5136 0.8901 20 1 -0.3633 0.5141 -0.8899 21 1 1.9766 2.1096 0.0006 22 1 4.6063 -2.4307 -0.0026 23 1 6.1571 -0.2446 0.8876 24 1 6.1562 -0.2438 -0.8924 25 1 6.9770 -2.5844 0.8869 26 1 6.9763 -2.5843 -0.8930 27 1 10.2472 -4.0242 -0.0034 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107746.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = 16.152099 kcal Electronic energy + Delta-G solvation = -11656.645962 eV Core-core repulsion = 9416.049447 eV Total energy + Delta-G solvation = -2240.596515 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.73846 -36.14646 -34.13042 -33.14903 -31.73196 -29.54005 -25.88802 -24.55635 -22.13659 -20.90269 -20.63124 -17.81165 -16.48273 -16.33584 -15.04550 -14.67537 -14.36420 -13.94454 -13.61139 -13.14369 -13.05755 -12.30162 -12.17828 -11.32869 -11.23844 -10.95444 -10.63430 -10.49950 -9.92797 -9.66014 -9.43520 -9.31678 -8.45690 -7.27023 -6.11356 -4.14484 1.97302 2.49620 3.25189 3.27905 3.35546 3.40669 3.99290 4.40463 5.04775 5.16497 5.26022 5.39305 5.42261 5.49986 5.84657 6.24811 6.31114 6.38963 6.50285 6.69845 7.31004 7.49923 7.58163 7.73224 7.87823 8.22617 8.51031 8.91540 9.50442 11.00393 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.110599 B = 0.005970 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 253.107106 B = 4689.004881 C = 4916.362330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.113 4.113 3 C -0.004 4.004 4 N -0.547 5.547 5 C 0.464 3.536 6 N -0.680 5.680 7 C 0.147 3.853 8 C 0.011 3.989 9 C -0.520 4.520 10 H 0.062 0.938 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 O -0.234 6.234 18 H 0.069 0.931 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.176 0.824 22 H 0.411 0.589 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.090 4.762 -0.008 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.167 4.167 3 C -0.142 4.142 4 N -0.287 5.287 5 C 0.166 3.834 6 N -0.327 5.327 7 C 0.027 3.973 8 C -0.026 4.026 9 C -0.559 4.559 10 H 0.080 0.920 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 O -0.123 6.123 18 H 0.088 0.912 19 H 0.097 0.903 20 H 0.097 0.903 21 H 0.193 0.807 22 H 0.248 0.752 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.335 5.059 -0.002 14.263 hybrid contribution 0.315 -0.539 -0.002 0.625 sum -13.020 4.520 -0.003 13.782 Atomic orbital electron populations 1.20036 0.84761 1.03346 1.02813 1.22726 0.94017 0.83979 1.15953 1.22776 0.87890 0.99667 1.03867 1.70918 1.21983 1.06054 1.29776 1.21907 0.79727 0.87088 0.94715 1.44103 1.00796 1.07413 1.80404 1.21815 0.76562 0.97880 1.01066 1.19365 0.91926 0.93171 0.98147 1.21041 0.90040 0.93369 1.51464 0.92013 1.25001 0.99559 0.94818 0.94939 1.69965 1.29821 1.03150 1.50284 0.86431 0.83780 0.79587 0.77620 1.19516 1.20927 1.20921 1.84332 1.16558 1.36826 1.74614 0.91178 0.90324 0.90321 0.80715 0.75246 0.92360 0.92362 0.95715 0.95715 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.48 10.43 36.01 0.38 -0.10 15 2 C -0.11 -1.62 7.38 -35.77 -0.26 -1.89 15 3 C 0.00 -0.06 11.79 -17.74 -0.21 -0.27 15 4 N -0.55 -10.52 10.94 -14.45 -0.16 -10.68 15 5 C 0.46 8.78 9.06 -86.99 -0.79 7.99 15 6 N -0.68 -12.81 5.69 -62.29 -0.35 -13.16 15 7 C 0.15 3.14 5.92 -4.04 -0.02 3.11 15 8 C 0.01 0.28 5.09 -27.88 -0.14 0.14 15 9 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 15 10 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 12 N -0.89 -26.09 13.29 55.43 0.74 -25.36 15 13 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 14 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 17 O -0.23 -4.03 10.80 3.70 0.04 -3.99 15 18 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 19 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.18 2.04 8.06 -52.49 -0.42 1.62 15 22 H 0.41 6.97 8.60 -40.82 -0.35 6.61 15 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 25 H 0.02 0.64 8.14 -51.93 -0.42 0.21 15 26 H 0.02 0.64 8.14 -51.93 -0.42 0.21 15 27 H 0.26 7.20 8.31 -40.82 -0.34 6.87 15 LS Contribution 245.50 15.07 3.70 3.70 Total: -1.00 -30.97 245.50 -5.79 -36.76 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -3.27 Total: 0.57 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.46 Total: -4.12 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.22 Total: -49.20 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.97 -5.79 -36.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107746.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.914 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds