Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34083 * 126.35902 * 2 1 4 4 N 1.34727 * 107.79013 * 179.78006 * 3 2 1 5 5 C 1.31056 * 108.60375 * 0.42355 * 4 3 2 6 6 N 1.38163 * 125.71058 * 179.83270 * 5 4 3 7 7 C 1.46499 * 120.00070 * 359.70316 * 6 5 4 8 8 C 1.53000 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46999 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46979 * 120.00420 * 13 11 9 16 16 H 1.48498 * 109.46942 * 240.00334 * 13 11 9 17 17 O 1.34212 * 108.57280 * 359.57786 * 5 4 3 18 18 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47221 * 299.98409 * 1 2 3 20 20 H 1.09005 * 109.46712 * 59.98252 * 1 2 3 21 21 H 1.08002 * 126.10873 * 0.04112 * 3 2 1 22 22 H 0.97000 * 119.99510 * 179.69318 * 6 5 4 23 23 H 1.09002 * 109.47391 * 59.99444 * 7 6 5 24 24 H 1.09001 * 109.46813 * 299.99500 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 26 26 H 1.08992 * 109.47399 * 59.99666 * 8 7 6 27 27 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3020 1.0798 0.0000 4 7 3.5791 0.6508 0.0049 5 6 3.5799 -0.6598 -0.0013 6 7 4.7023 -1.4655 -0.0022 7 6 6.0372 -0.8621 -0.0026 8 6 7.0961 -1.9665 -0.0031 9 6 8.4693 -1.3457 -0.0040 10 1 8.5761 -0.2710 -0.0039 11 6 9.5893 -2.1498 -0.0041 12 7 9.4593 -3.4585 -0.0037 13 14 11.2915 -1.3804 -0.0060 14 1 11.1659 0.0993 -0.0067 15 1 12.0318 -1.8133 1.2064 16 1 12.0300 -1.8155 -1.2187 17 8 2.3080 -1.0881 -0.0009 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5136 0.8901 20 1 -0.3633 0.5141 -0.8899 21 1 1.9766 2.1096 0.0006 22 1 4.6063 -2.4307 -0.0026 23 1 6.1571 -0.2446 0.8876 24 1 6.1562 -0.2438 -0.8924 25 1 6.9770 -2.5844 0.8869 26 1 6.9763 -2.5843 -0.8930 27 1 10.2472 -4.0242 -0.0034 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107746.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = -6.569866 kcal Electronic energy + Delta-G solvation = -11657.631261 eV Core-core repulsion = 9416.049447 eV Total energy + Delta-G solvation = -2241.581813 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.03887 -37.75353 -35.49488 -35.08039 -32.97034 -31.27167 -27.29938 -26.21876 -23.72763 -22.28769 -22.20321 -19.29693 -18.35636 -17.81080 -16.55790 -16.29522 -15.98625 -15.67200 -14.88126 -14.33870 -14.03921 -13.85250 -13.26436 -13.09693 -13.08033 -12.61587 -12.49996 -12.13357 -11.65888 -11.39872 -11.23761 -10.94331 -10.56928 -8.60388 -8.24643 -6.35292 0.73481 1.13301 1.42345 1.43562 1.56891 1.92678 2.40837 2.75749 3.10719 3.93171 4.12147 4.31302 4.39023 4.48766 4.58943 4.81009 4.82424 5.02404 5.28600 5.35674 5.43003 5.55767 5.72801 5.95609 6.15212 6.29320 6.78479 7.14804 7.34195 8.87855 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.110599 B = 0.005970 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 253.107106 B = 4689.004881 C = 4916.362330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.099 4.099 3 C -0.029 4.029 4 N -0.574 5.574 5 C 0.441 3.559 6 N -0.684 5.684 7 C 0.173 3.827 8 C 0.021 3.979 9 C -0.543 4.543 10 H 0.064 0.936 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.277 1.277 17 O -0.241 6.241 18 H 0.076 0.924 19 H 0.103 0.897 20 H 0.103 0.897 21 H 0.208 0.792 22 H 0.417 0.583 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.141 5.897 -0.010 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.152 4.152 3 C -0.165 4.165 4 N -0.315 5.315 5 C 0.143 3.857 6 N -0.332 5.332 7 C 0.051 3.949 8 C -0.017 4.017 9 C -0.581 4.581 10 H 0.082 0.918 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.793 3.207 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.203 1.203 17 O -0.130 6.130 18 H 0.095 0.905 19 H 0.122 0.878 20 H 0.122 0.878 21 H 0.225 0.775 22 H 0.255 0.745 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.431 6.201 -0.004 15.707 hybrid contribution 0.473 -0.861 -0.001 0.983 sum -13.958 5.340 -0.004 14.944 Atomic orbital electron populations 1.20346 0.80690 1.04590 1.05206 1.23853 0.95979 0.82891 1.12481 1.23347 0.86629 1.01617 1.04944 1.70858 1.24519 1.06394 1.29740 1.21827 0.80211 0.87115 0.96578 1.43698 1.00284 1.07695 1.81512 1.21254 0.77098 0.96187 1.00329 1.19167 0.92436 0.93600 0.96470 1.21457 0.91501 0.93728 1.51442 0.91791 1.25908 1.03775 0.95271 0.94393 1.70075 1.31145 1.04522 1.51076 0.85346 0.78598 0.78991 0.77808 1.18646 1.20316 1.20308 1.84353 1.16151 1.38083 1.74377 0.90516 0.87821 0.87811 0.77477 0.74510 0.93050 0.93038 0.97319 0.97313 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.43 71.24 0.74 0.00 15 2 C -0.10 -2.61 7.38 24.74 0.18 -2.43 15 3 C -0.03 -0.83 11.79 83.30 0.98 0.15 15 4 N -0.57 -21.76 10.94 -313.89 -3.43 -25.19 15 5 C 0.44 16.63 9.06 179.08 1.62 18.25 15 6 N -0.68 -26.19 5.69 -461.46 -2.63 -28.82 15 7 C 0.17 7.53 5.92 86.38 0.51 8.04 15 8 C 0.02 1.06 5.09 29.85 0.15 1.21 15 9 C -0.54 -30.25 9.11 25.60 0.23 -30.01 15 10 H 0.06 3.45 7.74 -2.91 -0.02 3.43 15 11 C 0.01 0.29 5.46 84.66 0.46 0.75 15 12 N -0.93 -54.83 13.29 21.45 0.28 -54.55 15 13 Si 0.97 43.57 29.54 68.60 2.03 45.59 15 14 H -0.26 -11.36 7.11 99.48 0.71 -10.65 15 15 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 16 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 17 O -0.24 -8.03 10.80 -9.69 -0.10 -8.14 15 18 H 0.08 1.04 8.14 -2.39 -0.02 1.02 15 19 H 0.10 1.05 8.14 -2.39 -0.02 1.03 15 20 H 0.10 1.05 8.14 -2.38 -0.02 1.03 15 21 H 0.21 4.26 8.06 -2.91 -0.02 4.24 15 22 H 0.42 14.53 8.60 -92.71 -0.80 13.73 15 23 H 0.05 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.05 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.01 0.45 8.14 -2.39 -0.02 0.44 15 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 15 27 H 0.27 14.70 8.31 -92.71 -0.77 13.93 15 Total: -1.00 -66.30 245.50 1.41 -64.89 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.37 Total: 10.25 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 4.89 Total: -4.03 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -5.78 Total: -108.56 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.10 Total: -8.14 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -66.30 1.41 -64.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107746.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.324 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds