Wall clock time and date at job start Mon Mar 30 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 C 1.50702 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.34928 * 125.78706 * 94.97346 * 4 3 2 6 6 C 1.41359 * 108.08441 * 180.02562 * 5 4 3 7 7 O 1.21814 * 126.17836 * 180.02562 * 6 5 4 8 8 N 1.34866 * 107.64533 * 0.02562 * 6 5 4 9 9 C 1.36946 * 126.15734 * 179.97438 * 8 6 5 10 10 H 1.07996 * 119.99906 * 340.20167 * 9 8 6 11 11 C 1.38962 * 119.99693 * 160.20092 * 9 8 6 12 12 N 1.31428 * 120.00079 * 339.28755 * 11 9 8 13 13 Si 1.86803 * 119.99842 * 159.28525 * 11 9 8 14 14 H 1.48501 * 109.47135 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.47115 * 299.99901 * 13 11 9 16 16 H 1.48505 * 109.47060 * 60.00080 * 13 11 9 17 17 N 1.36621 * 125.78504 * 275.30868 * 4 3 2 18 18 H 0.97004 * 125.92718 * 359.95778 * 17 4 3 19 19 H 1.08993 * 109.47243 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47063 * 300.00271 * 1 2 3 21 21 H 1.08999 * 109.46836 * 59.99740 * 1 2 3 22 22 H 1.08997 * 109.46599 * 240.00130 * 2 1 3 23 23 H 1.08996 * 109.46827 * 119.99733 * 2 1 3 24 24 H 1.08999 * 109.47059 * 60.00103 * 3 2 1 25 25 H 1.09003 * 109.47217 * 300.00232 * 3 2 1 26 26 H 1.07996 * 125.95841 * 0.02562 * 5 4 3 27 27 H 0.96998 * 120.00225 * 354.04982 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3356 1.5376 -1.0914 6 6 5.6825 1.4997 -0.6638 7 8 6.6662 1.5623 -1.3795 8 7 5.6817 1.3817 0.6797 9 6 6.7869 1.3101 1.4852 10 1 7.7421 1.0281 1.0675 11 6 6.6793 1.6004 2.8399 12 7 5.6694 2.3171 3.2802 13 14 7.9699 0.9718 4.0352 14 1 7.6286 1.4154 5.4106 15 1 8.0073 -0.5120 3.9880 16 1 9.3002 1.5128 3.6569 17 7 4.3464 1.3398 1.1026 18 1 4.0424 1.2551 2.0198 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 3.9969 1.6271 -2.1129 27 1 5.0473 2.7159 2.6519 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118553.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:02 Heat of formation + Delta-G solvation = 23.021066 kcal Electronic energy + Delta-G solvation = -12314.385120 eV Core-core repulsion = 10074.086466 eV Total energy + Delta-G solvation = -2240.298654 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.45145 -35.91375 -34.93950 -33.44214 -30.61681 -28.78333 -27.34008 -24.29372 -21.73796 -20.06994 -19.61181 -18.93723 -16.03747 -15.10513 -14.63497 -14.51425 -14.18511 -13.82453 -13.31987 -12.97478 -12.52608 -12.15221 -11.76341 -11.48091 -11.30472 -11.17986 -10.81980 -10.60895 -10.36031 -10.30465 -9.47179 -8.35564 -8.28347 -7.18921 -6.77371 -4.24548 2.59433 3.00755 3.20231 3.27295 3.40166 4.08558 4.36853 4.93944 5.01687 5.04893 5.15523 5.36952 5.55551 5.65916 5.81992 5.86692 6.05746 6.18432 6.36116 6.51986 6.88487 7.01757 7.53702 7.70825 7.97454 8.30992 8.96554 9.10577 9.95688 10.26028 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.038765 B = 0.011207 C = 0.009248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.121059 B = 2497.828746 C = 3027.101437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.052 4.052 4 C 0.120 3.880 5 C -0.345 4.345 6 C 0.468 3.532 7 O -0.611 6.611 8 N -0.239 5.239 9 C -0.387 4.387 10 H 0.118 0.882 11 C 0.007 3.993 12 N -0.879 5.879 13 Si 1.085 2.915 14 H -0.275 1.275 15 H -0.279 1.279 16 H -0.277 1.277 17 N -0.485 5.485 18 H 0.435 0.565 19 H 0.053 0.947 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.140 0.860 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 -3.307 0.074 10.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.091 4.091 4 C -0.001 4.001 5 C -0.377 4.377 6 C 0.268 3.732 7 O -0.498 6.498 8 N -0.046 5.046 9 C -0.515 4.515 10 H 0.135 0.865 11 C -0.200 4.200 12 N -0.515 5.515 13 Si 0.908 3.092 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.203 1.203 17 N -0.205 5.205 18 H 0.281 0.719 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.158 0.842 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.701 -3.359 1.552 9.456 hybrid contribution -0.636 0.157 -1.110 1.289 sum -9.337 -3.202 0.442 9.881 Atomic orbital electron populations 1.21778 0.95663 1.01580 1.01789 1.21529 0.95442 0.96059 1.02890 1.20283 0.87620 0.97742 1.03505 1.20477 0.92325 1.00765 0.86563 1.21451 0.93593 1.24584 0.98113 1.16697 0.90538 0.85641 0.80333 1.90667 1.40593 1.62158 1.56404 1.44243 0.93516 1.60048 1.06821 1.20786 0.87597 1.50067 0.93007 0.86489 1.26769 1.02083 0.94334 0.96825 1.70834 1.15496 1.25978 1.39152 0.83272 0.74140 0.76516 0.75224 1.20000 1.20537 1.20252 1.44408 0.97226 1.70696 1.08151 0.71885 0.92758 0.92768 0.92594 0.91214 0.91974 0.90914 0.89264 0.84174 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.08 15 2 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 15 3 C -0.05 -0.72 5.75 -27.88 -0.16 -0.88 15 4 C 0.12 2.38 6.46 -81.63 -0.53 1.85 15 5 C -0.34 -7.89 10.73 -39.57 -0.42 -8.32 15 6 C 0.47 13.34 7.88 -15.03 -0.12 13.22 15 7 O -0.61 -19.49 17.88 5.09 0.09 -19.39 15 8 N -0.24 -6.62 3.47 -13.64 -0.05 -6.67 15 9 C -0.39 -11.04 9.94 -15.00 -0.15 -11.19 15 10 H 0.12 3.42 7.91 -52.49 -0.42 3.01 15 11 C 0.01 0.18 5.34 -17.46 -0.09 0.08 15 12 N -0.88 -23.68 12.72 55.50 0.71 -22.98 15 13 Si 1.09 22.77 29.97 -169.99 -5.09 17.68 15 14 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 15 H -0.28 -5.61 7.11 56.52 0.40 -5.20 15 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 17 N -0.49 -11.11 5.79 33.69 0.19 -10.91 15 18 H 0.43 9.44 7.28 -182.58 -1.33 8.11 15 19 H 0.05 0.48 8.14 -51.93 -0.42 0.05 15 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 15 22 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.09 1.08 8.14 -51.93 -0.42 0.65 15 26 H 0.14 2.84 8.06 -52.49 -0.42 2.41 15 27 H 0.28 7.44 6.42 -40.82 -0.26 7.18 15 LS Contribution 239.73 15.07 3.61 3.61 Total: -1.00 -33.49 239.73 -5.98 -39.47 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.18 Total: 7.15 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.26 Total: -7.96 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.85 Total: -40.56 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.09 Total: -19.39 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.09 Total: 17.68 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.49 -5.98 -39.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118553.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.495 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds