Wall clock time and date at job start Mon Mar 30 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 C 1.50702 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.34928 * 125.78706 * 94.97346 * 4 3 2 6 6 C 1.41359 * 108.08441 * 180.02562 * 5 4 3 7 7 O 1.21814 * 126.17836 * 180.02562 * 6 5 4 8 8 N 1.34866 * 107.64533 * 0.02562 * 6 5 4 9 9 C 1.36946 * 126.15734 * 179.97438 * 8 6 5 10 10 H 1.07996 * 119.99906 * 340.20167 * 9 8 6 11 11 C 1.38962 * 119.99693 * 160.20092 * 9 8 6 12 12 N 1.31428 * 120.00079 * 339.28755 * 11 9 8 13 13 Si 1.86803 * 119.99842 * 159.28525 * 11 9 8 14 14 H 1.48501 * 109.47135 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.47115 * 299.99901 * 13 11 9 16 16 H 1.48505 * 109.47060 * 60.00080 * 13 11 9 17 17 N 1.36621 * 125.78504 * 275.30868 * 4 3 2 18 18 H 0.97004 * 125.92718 * 359.95778 * 17 4 3 19 19 H 1.08993 * 109.47243 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47063 * 300.00271 * 1 2 3 21 21 H 1.08999 * 109.46836 * 59.99740 * 1 2 3 22 22 H 1.08997 * 109.46599 * 240.00130 * 2 1 3 23 23 H 1.08996 * 109.46827 * 119.99733 * 2 1 3 24 24 H 1.08999 * 109.47059 * 60.00103 * 3 2 1 25 25 H 1.09003 * 109.47217 * 300.00232 * 3 2 1 26 26 H 1.07996 * 125.95841 * 0.02562 * 5 4 3 27 27 H 0.96998 * 120.00225 * 354.04982 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3356 1.5376 -1.0914 6 6 5.6825 1.4997 -0.6638 7 8 6.6662 1.5623 -1.3795 8 7 5.6817 1.3817 0.6797 9 6 6.7869 1.3101 1.4852 10 1 7.7421 1.0281 1.0675 11 6 6.6793 1.6004 2.8399 12 7 5.6694 2.3171 3.2802 13 14 7.9699 0.9718 4.0352 14 1 7.6286 1.4154 5.4106 15 1 8.0073 -0.5120 3.9880 16 1 9.3002 1.5128 3.6569 17 7 4.3464 1.3398 1.1026 18 1 4.0424 1.2551 2.0198 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 3.9969 1.6271 -2.1129 27 1 5.0473 2.7159 2.6519 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118553.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:02 Heat of formation + Delta-G solvation = -0.030001 kcal Electronic energy + Delta-G solvation = -12315.384689 eV Core-core repulsion = 10074.086466 eV Total energy + Delta-G solvation = -2241.298224 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.41376 -37.89119 -36.62548 -35.10673 -32.43381 -30.72962 -28.72770 -26.16111 -22.87359 -22.04174 -21.29374 -20.96469 -17.96163 -16.79599 -16.63823 -16.11230 -15.70813 -15.53515 -14.84685 -14.44554 -14.17054 -13.99457 -13.19579 -13.00265 -12.81559 -12.53009 -12.17097 -12.08458 -11.94087 -11.56073 -11.34671 -10.50813 -10.29434 -9.27833 -8.80955 -6.44347 0.82418 1.13634 1.49458 1.57373 1.78947 2.29468 2.34818 2.89306 3.42143 3.70684 4.09085 4.17364 4.51367 4.56605 4.71203 4.82932 5.01862 5.08158 5.17863 5.25365 5.36331 5.41934 5.49836 5.65267 6.05036 6.25654 6.89694 7.05955 7.80395 8.12406 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.038765 B = 0.011207 C = 0.009248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.121059 B = 2497.828746 C = 3027.101437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.049 4.049 4 C 0.161 3.839 5 C -0.366 4.366 6 C 0.431 3.569 7 O -0.666 6.666 8 N -0.262 5.262 9 C -0.431 4.431 10 H 0.093 0.907 11 C -0.016 4.016 12 N -0.883 5.883 13 Si 1.136 2.864 14 H -0.264 1.264 15 H -0.264 1.264 16 H -0.269 1.269 17 N -0.479 5.479 18 H 0.441 0.559 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.166 0.834 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.119 -3.568 1.133 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.087 4.087 4 C 0.039 3.961 5 C -0.397 4.397 6 C 0.233 3.767 7 O -0.558 6.558 8 N -0.068 5.068 9 C -0.558 4.558 10 H 0.110 0.890 11 C -0.220 4.220 12 N -0.518 5.518 13 Si 0.952 3.048 14 H -0.189 1.189 15 H -0.189 1.189 16 H -0.194 1.194 17 N -0.200 5.200 18 H 0.288 0.712 19 H 0.080 0.920 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.184 0.816 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.027 -3.615 2.613 11.895 hybrid contribution -0.048 0.261 -1.457 1.481 sum -11.076 -3.354 1.156 11.630 Atomic orbital electron populations 1.21732 0.93056 1.02543 1.02877 1.21511 0.97595 0.94416 1.02202 1.20615 0.82448 0.99608 1.06071 1.21465 0.94854 0.95444 0.84314 1.21563 0.91186 1.26599 1.00354 1.17611 0.92152 0.86221 0.80733 1.90586 1.42650 1.64739 1.57835 1.44253 0.95376 1.60335 1.06828 1.20844 0.87966 1.52831 0.94159 0.88962 1.28280 1.03162 0.93030 0.97491 1.70936 1.15725 1.26306 1.38790 0.82684 0.71906 0.76915 0.73287 1.18859 1.18858 1.19428 1.44544 0.95581 1.70508 1.09339 0.71187 0.91969 0.91905 0.91299 0.91803 0.92993 0.88666 0.86334 0.81627 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 71.98 0.71 -1.45 15 2 C -0.12 -2.51 5.92 30.60 0.18 -2.33 15 3 C -0.05 -1.15 5.75 29.85 0.17 -0.98 15 4 C 0.16 6.07 6.46 41.05 0.27 6.33 15 5 C -0.37 -16.61 10.73 22.28 0.24 -16.37 15 6 C 0.43 25.41 7.88 85.00 0.67 26.08 15 7 O -0.67 -44.74 17.88 -4.71 -0.08 -44.82 15 8 N -0.26 -14.91 3.47 -315.18 -1.09 -16.01 15 9 C -0.43 -25.45 9.94 84.07 0.84 -24.62 15 10 H 0.09 5.73 7.91 -2.91 -0.02 5.71 15 11 C -0.02 -0.87 5.34 84.93 0.45 -0.42 15 12 N -0.88 -47.09 12.72 21.67 0.28 -46.82 15 13 Si 1.14 45.31 29.97 68.60 2.06 47.36 15 14 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 15 H -0.26 -9.83 7.11 99.48 0.71 -9.13 15 16 H -0.27 -10.37 7.11 99.48 0.71 -9.66 15 17 N -0.48 -21.67 5.79 -47.31 -0.27 -21.95 15 18 H 0.44 18.69 7.28 -213.30 -1.55 17.14 15 19 H 0.06 0.86 8.14 -2.39 -0.02 0.84 15 20 H 0.06 0.85 8.14 -2.38 -0.02 0.83 15 21 H 0.07 0.88 8.14 -2.39 -0.02 0.86 15 22 H 0.06 1.43 8.14 -2.39 -0.02 1.42 15 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 15 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.12 2.25 8.14 -2.39 -0.02 2.23 15 26 H 0.17 6.49 8.06 -2.91 -0.02 6.47 15 27 H 0.27 14.39 6.42 -92.71 -0.60 13.80 15 Total: -1.00 -75.91 239.73 4.20 -71.71 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.21 Total: 24.26 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 3.53 Total: -13.74 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.09 Total: -84.77 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.08 Total: -44.82 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.06 Total: 47.36 kcal Total: -75.91 4.20 -71.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118553.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.682 kcal (2) G-P(sol) polarization free energy of solvation -75.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds