Wall clock time and date at job start Mon Mar 30 2020 02:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34670 * 126.59091 * 2 1 4 4 N 1.34125 * 108.02140 * 179.97438 * 3 2 1 5 5 C 1.30499 * 109.25533 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.64959 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.47497 * 184.97576 * 6 5 4 8 8 O 1.42901 * 109.47481 * 64.97443 * 6 5 4 9 9 C 1.53005 * 109.47120 * 304.97434 * 6 5 4 10 10 C 1.50703 * 109.47272 * 185.00242 * 9 6 5 11 11 H 1.08000 * 120.00207 * 0.02562 * 10 9 6 12 12 C 1.37874 * 120.00146 * 179.97438 * 10 9 6 13 13 N 1.31525 * 119.99545 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46766 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46969 * 120.00119 * 14 12 10 17 17 H 1.48495 * 109.47174 * 240.00001 * 14 12 10 18 18 N 1.35047 * 108.70122 * 359.76948 * 5 4 3 19 19 H 0.97002 * 126.40008 * 180.26988 * 18 5 4 20 20 H 1.09001 * 109.46953 * 90.02685 * 1 2 3 21 21 H 1.09000 * 109.47318 * 210.02283 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.02914 * 1 2 3 23 23 H 1.08003 * 125.98676 * 359.95555 * 3 2 1 24 24 H 0.96695 * 113.99733 * 299.99948 * 8 6 5 25 25 H 1.09001 * 109.47042 * 304.99850 * 9 6 5 26 26 H 1.08996 * 109.46967 * 64.99949 * 9 6 5 27 27 H 0.97000 * 119.99075 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5813 0.6542 0.0006 5 6 3.5969 -0.6507 0.0015 6 6 4.8318 -1.5143 0.0029 7 1 4.5430 -2.5617 -0.0857 8 8 5.5481 -1.3194 1.2240 9 6 5.7244 -1.1297 -1.1788 10 6 6.8978 -2.0728 -1.2499 11 1 6.9967 -2.8673 -0.5251 12 6 7.8443 -1.9221 -2.2410 13 7 7.7230 -0.9554 -3.1246 14 14 9.2991 -3.0905 -2.3287 15 1 9.2038 -4.0830 -1.2281 16 1 9.2880 -3.7975 -3.6346 17 1 10.5615 -2.3204 -2.1935 18 7 2.3230 -1.0990 0.0067 19 1 2.0392 -2.0266 0.0121 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 1.9865 2.1118 -0.0007 24 1 5.8370 -0.4082 1.3693 25 1 5.1506 -1.1934 -2.1034 26 1 6.0854 -0.1101 -1.0447 27 1 8.3892 -0.8492 -3.8216 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261120558.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:11 Heat of formation + Delta-G solvation = -9.721102 kcal Electronic energy + Delta-G solvation = -12038.669618 eV Core-core repulsion = 9796.951157 eV Total energy + Delta-G solvation = -2241.718461 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.72419 -36.50555 -32.83991 -32.43853 -31.56440 -29.55803 -26.50461 -24.28694 -21.79544 -20.83473 -19.68536 -17.67875 -16.10550 -15.40488 -14.92876 -14.49659 -14.21366 -13.61297 -13.22744 -12.95109 -12.71383 -12.48217 -12.17964 -11.15197 -10.78931 -10.70506 -10.48722 -10.15986 -9.65390 -9.58043 -9.11323 -9.05756 -8.36593 -7.86968 -5.98040 -4.00552 2.31850 3.33756 3.38255 3.41511 3.46453 3.52245 4.48085 4.90880 5.12038 5.14875 5.31128 5.41680 5.49312 5.62625 5.76162 5.80905 6.28870 6.51800 6.60250 7.08819 7.55179 7.67665 7.73734 7.99281 8.34092 8.44794 8.51117 9.06219 9.62784 11.13198 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.070427 B = 0.007935 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.477726 B = 3527.930089 C = 3632.337085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.047 4.047 3 C -0.027 4.027 4 N -0.481 5.481 5 C 0.199 3.801 6 C 0.193 3.807 7 H 0.096 0.904 8 O -0.551 6.551 9 C 0.008 3.992 10 C -0.515 4.515 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 N -0.563 5.563 19 H 0.415 0.585 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.164 0.836 24 H 0.377 0.623 25 H 0.023 0.977 26 H 0.035 0.965 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.394 0.208 5.420 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.163 4.163 3 C -0.176 4.176 4 N -0.200 5.200 5 C -0.066 4.066 6 C 0.132 3.868 7 H 0.114 0.886 8 O -0.354 6.354 9 C -0.030 4.030 10 C -0.553 4.553 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.210 1.210 18 N -0.167 5.167 19 H 0.252 0.748 20 H 0.087 0.913 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.182 0.818 24 H 0.225 0.775 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.703 0.199 5.348 12.869 hybrid contribution -0.068 -0.838 -0.360 0.914 sum -11.771 -0.638 4.988 12.800 Atomic orbital electron populations 1.20140 0.87562 1.02847 1.02357 1.21209 0.94188 0.87596 1.13276 1.22100 0.88738 0.98277 1.08455 1.70231 1.21942 1.08480 1.19381 1.24964 0.86669 0.91972 1.02979 1.20594 0.83668 0.94763 0.87784 0.88578 1.86451 1.74835 1.34070 1.40091 1.19672 0.93785 0.98420 0.91146 1.21167 1.07181 1.14252 1.12689 0.92025 1.25015 0.98200 0.95630 0.95647 1.70004 1.35528 1.31481 1.16318 0.86491 0.82542 0.80939 0.77763 1.19650 1.21154 1.20998 1.43260 1.07178 1.09071 1.57173 0.74827 0.91280 0.92123 0.90293 0.81827 0.77501 0.95835 0.94694 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.44 36.01 0.38 -0.30 15 2 C -0.05 -0.69 7.24 -81.60 -0.59 -1.28 15 3 C -0.03 -0.46 11.79 -17.81 -0.21 -0.67 15 4 N -0.48 -9.88 11.21 -10.82 -0.12 -10.00 15 5 C 0.20 3.89 7.03 -155.42 -1.09 2.80 15 6 C 0.19 4.13 3.46 -27.88 -0.10 4.03 15 7 H 0.10 1.92 8.14 -51.92 -0.42 1.49 15 8 O -0.55 -11.74 13.08 -35.23 -0.46 -12.20 15 9 C 0.01 0.20 4.61 -27.88 -0.13 0.07 15 10 C -0.51 -14.60 8.88 -34.44 -0.31 -14.90 15 11 H 0.06 1.72 7.74 -52.49 -0.41 1.32 15 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 13 N -0.89 -27.17 13.29 55.43 0.74 -26.43 15 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 15 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 18 N -0.56 -8.77 6.15 -6.54 -0.04 -8.81 15 19 H 0.41 5.07 8.96 -40.82 -0.37 4.71 15 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.08 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.16 2.26 8.06 -52.48 -0.42 1.84 15 24 H 0.38 7.38 9.04 45.56 0.41 7.79 15 25 H 0.02 0.66 8.14 -51.93 -0.42 0.23 15 26 H 0.03 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 244.46 15.07 3.68 3.68 Total: -1.00 -33.36 244.46 -5.82 -39.19 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -2.45 Total: 6.43 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.15 Total: -8.72 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.57 Total: -45.24 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.46 Total: -12.20 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.36 -5.82 -39.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120558.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.465 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds