Wall clock time and date at job start Mon Mar 30 2020 02:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34670 * 126.59091 * 2 1 4 4 N 1.34125 * 108.02140 * 179.97438 * 3 2 1 5 5 C 1.30499 * 109.25533 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.64959 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.47497 * 184.97576 * 6 5 4 8 8 O 1.42901 * 109.47481 * 64.97443 * 6 5 4 9 9 C 1.53005 * 109.47120 * 304.97434 * 6 5 4 10 10 C 1.50703 * 109.47272 * 185.00242 * 9 6 5 11 11 H 1.08000 * 120.00207 * 0.02562 * 10 9 6 12 12 C 1.37874 * 120.00146 * 179.97438 * 10 9 6 13 13 N 1.31525 * 119.99545 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46766 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46969 * 120.00119 * 14 12 10 17 17 H 1.48495 * 109.47174 * 240.00001 * 14 12 10 18 18 N 1.35047 * 108.70122 * 359.76948 * 5 4 3 19 19 H 0.97002 * 126.40008 * 180.26988 * 18 5 4 20 20 H 1.09001 * 109.46953 * 90.02685 * 1 2 3 21 21 H 1.09000 * 109.47318 * 210.02283 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.02914 * 1 2 3 23 23 H 1.08003 * 125.98676 * 359.95555 * 3 2 1 24 24 H 0.96695 * 113.99733 * 299.99948 * 8 6 5 25 25 H 1.09001 * 109.47042 * 304.99850 * 9 6 5 26 26 H 1.08996 * 109.46967 * 64.99949 * 9 6 5 27 27 H 0.97000 * 119.99075 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5813 0.6542 0.0006 5 6 3.5969 -0.6507 0.0015 6 6 4.8318 -1.5143 0.0029 7 1 4.5430 -2.5617 -0.0857 8 8 5.5481 -1.3194 1.2240 9 6 5.7244 -1.1297 -1.1788 10 6 6.8978 -2.0728 -1.2499 11 1 6.9967 -2.8673 -0.5251 12 6 7.8443 -1.9221 -2.2410 13 7 7.7230 -0.9554 -3.1246 14 14 9.2991 -3.0905 -2.3287 15 1 9.2038 -4.0830 -1.2281 16 1 9.2880 -3.7975 -3.6346 17 1 10.5615 -2.3204 -2.1935 18 7 2.3230 -1.0990 0.0067 19 1 2.0392 -2.0266 0.0121 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 1.9865 2.1118 -0.0007 24 1 5.8370 -0.4082 1.3693 25 1 5.1506 -1.1934 -2.1034 26 1 6.0854 -0.1101 -1.0447 27 1 8.3892 -0.8492 -3.8216 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120558.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:11 Heat of formation + Delta-G solvation = -35.672982 kcal Electronic energy + Delta-G solvation = -12039.794976 eV Core-core repulsion = 9796.951157 eV Total energy + Delta-G solvation = -2242.843819 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.05057 -38.23274 -34.99136 -33.73058 -32.85579 -31.34943 -28.05409 -25.92770 -23.67292 -22.13430 -21.15356 -19.26519 -18.06148 -17.14680 -16.41402 -16.28159 -15.76110 -15.18945 -14.58884 -14.33655 -14.13853 -13.57917 -13.26312 -13.16830 -12.75494 -12.57737 -12.45798 -12.04917 -11.27174 -11.06730 -10.98334 -10.78966 -10.59570 -9.16183 -8.19288 -6.30576 1.03716 1.41453 1.42652 1.56405 2.13140 2.15482 2.43611 3.13571 3.53094 3.68191 4.03957 4.19614 4.36977 4.48341 4.67174 4.80318 4.85059 5.11528 5.33242 5.37281 5.55556 5.77874 5.84359 6.17473 6.48197 6.73512 6.86062 7.16072 7.38176 8.92847 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.070427 B = 0.007935 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.477726 B = 3527.930089 C = 3632.337085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.018 4.018 3 C -0.064 4.064 4 N -0.518 5.518 5 C 0.165 3.835 6 C 0.207 3.793 7 H 0.111 0.889 8 O -0.556 6.556 9 C 0.019 3.981 10 C -0.531 4.531 11 H 0.065 0.935 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.261 1.261 16 H -0.277 1.277 17 H -0.280 1.280 18 N -0.550 5.550 19 H 0.431 0.569 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.099 0.901 23 H 0.186 0.814 24 H 0.382 0.618 25 H -0.005 1.005 26 H 0.000 1.000 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 -0.835 6.008 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.134 4.134 3 C -0.211 4.211 4 N -0.239 5.239 5 C -0.099 4.099 6 C 0.146 3.854 7 H 0.129 0.871 8 O -0.360 6.360 9 C -0.019 4.019 10 C -0.569 4.569 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.793 3.207 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.206 1.206 18 N -0.156 5.156 19 H 0.271 0.729 20 H 0.102 0.898 21 H 0.100 0.900 22 H 0.118 0.882 23 H 0.203 0.797 24 H 0.230 0.770 25 H 0.014 0.986 26 H 0.019 0.981 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.038 -0.867 5.950 14.358 hybrid contribution 0.232 -0.444 -0.543 0.738 sum -12.806 -1.310 5.407 13.963 Atomic orbital electron populations 1.20360 0.83405 1.04968 1.03928 1.22005 0.96316 0.86216 1.08905 1.22635 0.87918 1.00296 1.10296 1.70113 1.24546 1.09364 1.19850 1.24282 0.87478 0.91730 1.06401 1.20169 0.83800 0.95841 0.85616 0.87106 1.86410 1.75160 1.34635 1.39790 1.19440 0.94008 0.96228 0.92213 1.21531 1.08012 1.14559 1.12761 0.91702 1.25983 1.01369 0.97341 0.95144 1.70142 1.36818 1.33400 1.17107 0.85339 0.78395 0.78685 0.78242 1.18485 1.20289 1.20569 1.43185 1.06019 1.10394 1.55989 0.72907 0.89784 0.90023 0.88196 0.79653 0.76964 0.98633 0.98149 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.44 71.24 0.74 -0.28 15 2 C -0.02 -0.47 7.24 40.95 0.30 -0.17 15 3 C -0.06 -2.09 11.79 83.52 0.98 -1.11 15 4 N -0.52 -21.57 11.21 -188.13 -2.11 -23.68 15 5 C 0.17 6.49 7.03 138.13 0.97 7.46 15 6 C 0.21 8.96 3.46 29.85 0.10 9.06 15 7 H 0.11 4.39 8.14 -2.38 -0.02 4.37 15 8 O -0.56 -23.89 13.08 -148.98 -1.95 -25.84 15 9 C 0.02 1.05 4.61 29.85 0.14 1.18 15 10 C -0.53 -30.57 8.88 25.60 0.23 -30.34 15 11 H 0.06 3.62 7.74 -2.91 -0.02 3.60 15 12 C 0.00 -0.05 5.46 84.65 0.46 0.42 15 13 N -0.93 -58.05 13.29 21.45 0.28 -57.77 15 14 Si 0.97 44.98 29.54 68.60 2.03 47.01 15 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 15 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 18 N -0.55 -16.25 6.15 -174.60 -1.07 -17.32 15 19 H 0.43 9.55 8.96 -92.71 -0.83 8.72 15 20 H 0.08 1.10 8.14 -2.39 -0.02 1.08 15 21 H 0.08 0.94 8.14 -2.39 -0.02 0.92 15 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 15 23 H 0.19 4.89 8.06 -2.91 -0.02 4.87 15 24 H 0.38 15.41 9.04 -74.06 -0.67 14.74 15 25 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 15 26 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 15 27 H 0.26 15.31 8.31 -92.71 -0.77 14.54 15 Total: -1.00 -73.14 244.46 0.79 -72.34 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.31 Total: 19.03 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.93 Total: -13.77 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -2.90 Total: -98.77 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.95 Total: -25.84 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.14 0.79 -72.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120558.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.671 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds