Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.39932 * 125.73601 * 124.71581 * 4 3 2 6 6 C 1.35912 * 107.92782 * 179.86493 * 5 4 3 7 7 O 1.35688 * 126.28376 * 180.11135 * 6 5 4 8 8 N 1.36601 * 107.43297 * 0.38965 * 6 5 4 9 9 C 1.37372 * 126.14233 * 179.76669 * 8 6 5 10 10 H 1.08000 * 120.00054 * 354.11591 * 9 8 6 11 11 C 1.38931 * 120.00052 * 174.10562 * 9 8 6 12 12 N 1.31339 * 120.00001 * 5.95181 * 11 9 8 13 13 Si 1.86801 * 120.00205 * 185.94805 * 11 9 8 14 14 H 1.48498 * 109.47423 * 94.97912 * 13 11 9 15 15 H 1.48495 * 109.47488 * 214.98429 * 13 11 9 16 16 H 1.48509 * 109.46800 * 334.98248 * 13 11 9 17 17 N 1.31016 * 125.73539 * 305.02358 * 4 3 2 18 18 H 1.09004 * 109.46712 * 299.99575 * 1 2 3 19 19 H 1.09001 * 109.47363 * 59.99818 * 1 2 3 20 20 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47179 * 120.00962 * 2 1 3 22 22 H 1.09004 * 109.46712 * 240.00425 * 2 1 3 23 23 H 1.09001 * 109.47054 * 300.00371 * 3 2 1 24 24 H 1.09000 * 109.47123 * 60.00076 * 3 2 1 25 25 H 1.07996 * 126.03261 * 359.97438 * 5 4 3 26 26 H 0.96694 * 113.99928 * 270.33822 * 7 6 5 27 27 H 0.97004 * 119.99966 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3639 2.0894 -0.9345 6 6 5.6581 1.8551 -0.5917 7 8 6.7568 2.3110 -1.2445 8 7 5.6496 1.0713 0.5270 9 6 6.7539 0.6021 1.1959 10 1 7.7414 0.7682 0.7913 11 6 6.6005 -0.0859 2.3932 12 7 5.3986 -0.3900 2.8265 13 14 8.1038 -0.5784 3.3866 14 1 8.3721 0.4515 4.4222 15 1 7.8565 -1.8874 4.0428 16 1 9.2782 -0.6909 2.4846 17 7 4.3126 0.8319 0.8699 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8933 -0.5139 0.8898 22 1 1.8933 -0.5138 -0.8901 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9563 0.8900 25 1 4.0257 2.6734 -1.7777 26 1 7.0742 1.7197 -1.9406 27 1 5.2915 -0.8706 3.6622 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261120959.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = 18.366136 kcal Electronic energy + Delta-G solvation = -12221.929152 eV Core-core repulsion = 9981.428645 eV Total energy + Delta-G solvation = -2240.500507 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.60650 -36.01459 -34.52765 -33.22096 -30.39586 -27.58173 -26.92799 -24.30046 -21.27742 -19.97039 -18.89516 -18.02504 -16.15447 -15.09315 -14.58759 -14.41827 -13.50159 -13.26120 -12.94981 -12.64017 -12.26758 -11.87975 -11.65163 -11.20603 -10.93862 -10.80308 -10.57819 -10.52407 -10.10824 -10.03357 -9.32109 -8.57031 -7.90975 -7.10903 -6.56919 -4.25526 2.94047 3.06347 3.10995 3.43458 3.81940 4.11112 4.50245 4.97214 5.40336 5.58863 5.63916 5.80508 6.04244 6.27137 6.36797 6.39091 6.48376 6.78165 6.88959 7.00702 7.10773 7.12072 7.46200 7.75464 8.16569 8.34426 8.73256 9.44362 9.67524 10.39220 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.034232 B = 0.012108 C = 0.009170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.760396 B = 2311.879036 C = 3052.702708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.016 4.016 4 C -0.017 4.017 5 C -0.308 4.308 6 C 0.128 3.872 7 O -0.470 6.470 8 N -0.155 5.155 9 C -0.322 4.322 10 H 0.116 0.884 11 C 0.048 3.952 12 N -0.770 5.770 13 Si 0.934 3.066 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.264 1.264 17 N -0.243 5.243 18 H 0.050 0.950 19 H 0.048 0.952 20 H 0.047 0.953 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.119 0.881 26 H 0.364 0.636 27 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 -0.498 -3.303 4.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.056 4.056 4 C -0.171 4.171 5 C -0.341 4.341 6 C -0.043 4.043 7 O -0.270 6.270 8 N 0.069 4.931 9 C -0.454 4.454 10 H 0.133 0.867 11 C -0.169 4.169 12 N -0.397 5.397 13 Si 0.758 3.242 14 H -0.196 1.196 15 H -0.201 1.201 16 H -0.188 1.188 17 N -0.078 5.078 18 H 0.070 0.930 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.216 0.784 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.791 -0.808 -1.755 3.395 hybrid contribution 0.925 -0.077 -0.649 1.133 sum -1.867 -0.885 -2.404 3.170 Atomic orbital electron populations 1.21794 0.96864 1.00844 1.01149 1.21448 0.94058 0.97271 1.02708 1.19652 0.88657 0.96403 1.00841 1.21732 0.95467 1.02725 0.97142 1.20251 0.90858 1.16313 1.06638 1.18705 0.86659 1.04961 0.93964 1.84846 1.44859 1.45989 1.51297 1.45472 1.05442 1.26579 1.15593 1.19926 0.85030 1.35674 1.04781 0.86671 1.25628 0.98341 0.95834 0.97122 1.70234 1.21496 1.29062 1.18937 0.85822 0.80292 0.78383 0.79738 1.19593 1.20077 1.18788 1.78276 0.84366 1.23611 1.21497 0.93037 0.93286 0.93358 0.91038 0.92596 0.92010 0.92114 0.86295 0.78358 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 15 2 C -0.12 -2.11 5.89 -26.73 -0.16 -2.27 15 3 C -0.02 -0.32 5.79 -27.89 -0.16 -0.48 15 4 C -0.02 -0.42 6.48 -82.31 -0.53 -0.95 15 5 C -0.31 -7.56 10.74 -39.78 -0.43 -7.99 15 6 C 0.13 3.33 7.97 -16.26 -0.13 3.20 15 7 O -0.47 -10.58 13.56 -18.77 -0.25 -10.84 15 8 N -0.15 -4.43 3.74 -11.64 -0.04 -4.47 15 9 C -0.32 -8.91 10.18 -14.81 -0.15 -9.06 15 10 H 0.12 2.97 7.84 -52.49 -0.41 2.56 15 11 C 0.05 1.25 5.50 -17.51 -0.10 1.16 15 12 N -0.77 -21.47 11.85 55.49 0.66 -20.81 15 13 Si 0.93 19.42 29.56 -169.99 -5.02 14.39 15 14 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 15 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 16 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 17 N -0.24 -6.92 10.40 33.71 0.35 -6.57 15 18 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.06 1.06 8.12 -51.93 -0.42 0.64 15 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.12 2.58 8.06 -52.49 -0.42 2.16 15 26 H 0.36 6.26 9.06 45.56 0.41 6.68 15 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 LS Contribution 243.12 15.07 3.66 3.66 Total: -1.00 -31.87 243.12 -4.45 -36.32 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -2.51 Total: 6.43 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.29 Total: -18.12 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.96 Total: -31.85 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.25 Total: -10.84 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.87 -4.45 -36.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120959.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.686 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds