Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.39932 * 125.73601 * 124.71581 * 4 3 2 6 6 C 1.35912 * 107.92782 * 179.86493 * 5 4 3 7 7 O 1.35688 * 126.28376 * 180.11135 * 6 5 4 8 8 N 1.36601 * 107.43297 * 0.38965 * 6 5 4 9 9 C 1.37372 * 126.14233 * 179.76669 * 8 6 5 10 10 H 1.08000 * 120.00054 * 354.11591 * 9 8 6 11 11 C 1.38931 * 120.00052 * 174.10562 * 9 8 6 12 12 N 1.31339 * 120.00001 * 5.95181 * 11 9 8 13 13 Si 1.86801 * 120.00205 * 185.94805 * 11 9 8 14 14 H 1.48498 * 109.47423 * 94.97912 * 13 11 9 15 15 H 1.48495 * 109.47488 * 214.98429 * 13 11 9 16 16 H 1.48509 * 109.46800 * 334.98248 * 13 11 9 17 17 N 1.31016 * 125.73539 * 305.02358 * 4 3 2 18 18 H 1.09004 * 109.46712 * 299.99575 * 1 2 3 19 19 H 1.09001 * 109.47363 * 59.99818 * 1 2 3 20 20 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47179 * 120.00962 * 2 1 3 22 22 H 1.09004 * 109.46712 * 240.00425 * 2 1 3 23 23 H 1.09001 * 109.47054 * 300.00371 * 3 2 1 24 24 H 1.09000 * 109.47123 * 60.00076 * 3 2 1 25 25 H 1.07996 * 126.03261 * 359.97438 * 5 4 3 26 26 H 0.96694 * 113.99928 * 270.33822 * 7 6 5 27 27 H 0.97004 * 119.99966 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3639 2.0894 -0.9345 6 6 5.6581 1.8551 -0.5917 7 8 6.7568 2.3110 -1.2445 8 7 5.6496 1.0713 0.5270 9 6 6.7539 0.6021 1.1959 10 1 7.7414 0.7682 0.7913 11 6 6.6005 -0.0859 2.3932 12 7 5.3986 -0.3900 2.8265 13 14 8.1038 -0.5784 3.3866 14 1 8.3721 0.4515 4.4222 15 1 7.8565 -1.8874 4.0428 16 1 9.2782 -0.6909 2.4846 17 7 4.3126 0.8319 0.8699 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8933 -0.5139 0.8898 22 1 1.8933 -0.5138 -0.8901 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9563 0.8900 25 1 4.0257 2.6734 -1.7777 26 1 7.0742 1.7197 -1.9406 27 1 5.2915 -0.8706 3.6622 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120959.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = -4.830531 kcal Electronic energy + Delta-G solvation = -12222.935035 eV Core-core repulsion = 9981.428645 eV Total energy + Delta-G solvation = -2241.506390 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.56879 -37.84209 -36.20828 -35.01111 -32.26993 -29.49916 -28.61122 -26.16634 -22.82495 -21.83155 -20.76730 -19.97032 -18.07008 -17.00911 -16.28403 -16.03946 -15.24342 -14.88990 -14.74285 -14.37015 -13.89696 -13.65122 -13.07843 -12.88996 -12.71554 -12.42507 -12.09144 -11.99141 -11.84104 -11.56471 -11.19202 -10.51165 -9.90088 -9.11193 -8.51696 -6.31675 1.18856 1.35693 1.53205 1.63233 2.06550 2.21588 2.58424 2.99308 3.64403 4.16567 4.27772 4.33691 4.52499 4.85887 4.89108 4.98797 5.09214 5.15845 5.17842 5.29481 5.41724 5.50717 5.59217 5.89469 6.25797 6.54487 6.81651 7.49242 7.67893 8.47344 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.034232 B = 0.012108 C = 0.009170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.760396 B = 2311.879036 C = 3052.702708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.016 4.016 4 C -0.021 4.021 5 C -0.315 4.315 6 C 0.121 3.879 7 O -0.472 6.472 8 N -0.186 5.186 9 C -0.361 4.361 10 H 0.124 0.876 11 C 0.000 4.000 12 N -0.816 5.816 13 Si 1.016 2.984 14 H -0.267 1.267 15 H -0.268 1.268 16 H -0.250 1.250 17 N -0.287 5.287 18 H 0.057 0.943 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.094 0.906 24 H 0.064 0.936 25 H 0.150 0.850 26 H 0.391 0.609 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -0.284 -3.879 4.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.055 4.055 4 C -0.176 4.176 5 C -0.347 4.347 6 C -0.050 4.050 7 O -0.275 6.275 8 N 0.037 4.963 9 C -0.492 4.492 10 H 0.141 0.859 11 C -0.212 4.212 12 N -0.443 5.443 13 Si 0.834 3.166 14 H -0.192 1.192 15 H -0.192 1.192 16 H -0.173 1.173 17 N -0.121 5.121 18 H 0.076 0.924 19 H 0.089 0.911 20 H 0.079 0.921 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.082 0.918 25 H 0.167 0.833 26 H 0.246 0.754 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.916 -0.599 -2.356 3.796 hybrid contribution 0.931 -0.068 -0.609 1.115 sum -1.984 -0.668 -2.965 3.630 Atomic orbital electron populations 1.21716 0.93274 1.02174 1.02532 1.21353 0.97093 0.95801 1.00660 1.19856 0.85374 0.97746 1.02505 1.22626 0.97821 1.01129 0.96011 1.20692 0.90308 1.16352 1.07395 1.19164 0.88064 1.04103 0.93656 1.84754 1.43989 1.46734 1.51984 1.45755 1.05659 1.28091 1.16771 1.20427 0.85465 1.37251 1.06072 0.85879 1.26768 1.01812 0.94978 0.97633 1.70369 1.24114 1.30198 1.19662 0.84636 0.76104 0.78054 0.77767 1.19203 1.19229 1.17310 1.78191 0.85080 1.25341 1.23461 0.92414 0.91098 0.92144 0.94571 0.93242 0.88785 0.91770 0.83278 0.75371 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.86 15 2 C -0.11 -3.93 5.89 30.59 0.18 -3.75 15 3 C -0.02 -0.60 5.79 29.85 0.17 -0.43 15 4 C -0.02 -1.03 6.48 43.09 0.28 -0.75 15 5 C -0.31 -15.14 10.74 22.14 0.24 -14.90 15 6 C 0.12 6.30 7.97 83.41 0.66 6.97 15 7 O -0.47 -20.73 13.56 -90.06 -1.22 -21.95 15 8 N -0.19 -10.83 3.74 -301.30 -1.13 -11.96 15 9 C -0.36 -20.38 10.18 83.99 0.86 -19.53 15 10 H 0.12 6.42 7.84 -2.91 -0.02 6.39 15 11 C 0.00 0.02 5.50 84.93 0.47 0.48 15 12 N -0.82 -46.74 11.85 21.65 0.26 -46.48 15 13 Si 1.02 39.93 29.56 68.60 2.03 41.96 15 14 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 15 H -0.27 -10.06 7.11 99.48 0.71 -9.35 15 16 H -0.25 -9.13 7.11 99.48 0.71 -8.42 15 17 N -0.29 -16.71 10.40 -47.26 -0.49 -17.20 15 18 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 19 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.09 2.93 8.12 -2.39 -0.02 2.91 15 24 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.15 6.07 8.06 -2.91 -0.02 6.05 15 26 H 0.39 12.83 9.06 -74.06 -0.67 12.16 15 27 H 0.28 14.53 8.31 -92.71 -0.77 13.76 15 Total: -1.00 -70.06 243.12 3.51 -66.55 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.50 Total: 23.85 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.57 Total: -34.77 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.36 Total: -75.64 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -1.22 Total: -21.95 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -70.06 3.51 -66.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120959.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.718 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds