Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46712 * 2 1 4 4 C 1.50697 * 109.47312 * 120.00361 * 2 1 3 5 5 N 1.32957 * 126.13540 * 300.30788 * 4 2 1 6 6 C 1.31712 * 110.02054 * 180.17103 * 5 4 2 7 7 O 1.35140 * 125.32055 * 179.81686 * 6 5 4 8 8 N 1.36048 * 109.36559 * 359.56624 * 6 5 4 9 9 H 0.97009 * 126.56536 * 180.24551 * 8 6 5 10 10 C 1.38811 * 106.87194 * 0.25531 * 8 6 5 11 11 C 1.39947 * 126.99695 * 179.97438 * 10 8 6 12 12 H 1.08001 * 119.99827 * 180.02562 * 11 10 8 13 13 C 1.39953 * 119.99877 * 0.03539 * 11 10 8 14 14 N 1.30956 * 119.99907 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99714 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47349 * 59.99279 * 15 13 11 17 17 H 1.48505 * 109.47083 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46794 * 299.98996 * 15 13 11 19 19 H 1.08997 * 109.47031 * 299.99163 * 1 2 3 20 20 H 1.08996 * 109.47476 * 59.99960 * 1 2 3 21 21 H 1.09001 * 109.46661 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47031 * 240.00837 * 2 1 3 23 23 H 1.08993 * 109.47666 * 300.00095 * 3 2 1 24 24 H 1.09005 * 109.47263 * 60.00575 * 3 2 1 25 25 H 1.09006 * 109.46947 * 179.97438 * 3 2 1 26 26 H 0.96700 * 114.00501 * 269.70409 * 7 6 5 27 27 H 0.97003 * 120.00122 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7829 -0.3676 2.4905 6 6 2.3816 -1.2046 3.3126 7 8 2.3368 -1.1411 4.6617 8 7 3.0478 -2.1464 2.5913 9 1 3.5694 -2.8836 2.9455 10 6 2.8384 -1.8503 1.2514 11 6 3.3348 -2.5512 0.1465 12 1 3.1000 -2.2186 -0.8539 13 6 4.1353 -3.6831 0.3378 14 7 4.4201 -4.0861 1.5509 15 14 4.7984 -4.6182 -1.1370 16 1 5.6451 -3.7143 -1.9564 17 1 5.6124 -5.7686 -0.6686 18 1 3.6654 -5.1149 -1.9585 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9564 0.8901 25 1 3.1300 1.4426 0.0005 26 1 3.0450 -0.6126 5.0544 27 1 4.9752 -4.8705 1.6835 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261123914.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = -19.110339 kcal Electronic energy + Delta-G solvation = -12436.624903 eV Core-core repulsion = 10194.499294 eV Total energy + Delta-G solvation = -2242.125609 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.95019 -36.15282 -34.25732 -33.56859 -30.15787 -28.42179 -26.25444 -24.50934 -21.15505 -20.45434 -18.38379 -17.72862 -16.93325 -15.18924 -14.80989 -14.04393 -13.53301 -13.29562 -12.73296 -12.63589 -11.83374 -11.80910 -11.38494 -11.26655 -10.97491 -10.85228 -10.39399 -10.29816 -10.26310 -9.73732 -9.54297 -8.32368 -8.26086 -7.04244 -7.02745 -4.37802 2.86639 2.99315 3.02795 3.55517 3.81955 4.14204 4.63158 5.17236 5.58582 5.92008 6.04361 6.21048 6.39224 6.57310 6.65291 6.70078 6.78725 7.05544 7.12029 7.18332 7.31422 7.65395 7.76592 8.03875 8.38268 8.64180 8.77640 9.54734 9.74332 10.05350 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.030487 B = 0.014474 C = 0.010508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.194162 B = 1934.072963 C = 2663.984689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.018 3.982 3 C -0.133 4.133 4 C -0.133 4.133 5 N -0.459 5.459 6 C 0.227 3.773 7 O -0.453 6.453 8 N -0.570 5.570 9 H 0.422 0.578 10 C 0.216 3.784 11 C -0.432 4.432 12 H 0.098 0.902 13 C 0.064 3.936 14 N -0.846 5.846 15 Si 0.932 3.068 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.263 1.263 19 H 0.051 0.949 20 H 0.038 0.962 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.363 0.637 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 1.888 -2.564 3.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.001 4.001 3 C -0.190 4.190 4 C -0.264 4.264 5 N -0.188 5.188 6 C -0.065 4.065 7 O -0.251 6.251 8 N -0.197 5.197 9 H 0.268 0.732 10 C 0.098 3.902 11 C -0.468 4.468 12 H 0.116 0.884 13 C -0.149 4.149 14 N -0.479 5.479 15 Si 0.756 3.244 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.188 1.188 19 H 0.071 0.929 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.215 0.785 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.324 2.080 -2.063 2.948 hybrid contribution 1.593 -1.322 -0.243 2.084 sum 1.269 0.758 -2.307 2.740 Atomic orbital electron populations 1.21749 0.96533 1.00823 1.00014 1.18902 0.93697 0.93784 0.93755 1.21748 1.00471 0.96813 1.00000 1.20234 1.13060 1.02205 0.90896 1.69149 1.22336 1.25739 1.01591 1.19649 1.08160 0.95886 0.82815 1.84817 1.53068 1.73567 1.13625 1.44078 1.42742 1.26450 1.06397 0.73182 1.18589 0.95486 0.93702 0.82426 1.18726 1.26547 1.08231 0.93289 0.88421 1.25977 0.94439 0.96878 0.97608 1.68965 1.32476 1.23962 1.22454 0.85951 0.79297 0.78598 0.80521 1.18817 1.20425 1.18802 0.92940 0.94329 0.93469 0.91288 0.94332 0.92988 0.93494 0.78508 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.18 37.16 0.34 -2.21 15 2 C 0.02 0.39 3.30 -91.77 -0.30 0.08 15 3 C -0.13 -2.49 9.18 37.16 0.34 -2.15 15 4 C -0.13 -3.38 5.74 -81.59 -0.47 -3.85 15 5 N -0.46 -12.03 11.20 -9.92 -0.11 -12.14 15 6 C 0.23 5.83 9.44 -88.43 -0.83 5.00 15 7 O -0.45 -10.02 13.62 -17.12 -0.23 -10.25 15 8 N -0.57 -14.94 5.88 -11.63 -0.07 -15.01 15 9 H 0.42 10.87 6.45 -40.82 -0.26 10.60 15 10 C 0.22 5.77 6.75 -83.55 -0.56 5.21 15 11 C -0.43 -11.02 9.08 -38.30 -0.35 -11.37 15 12 H 0.10 2.33 6.87 -52.49 -0.36 1.97 15 13 C 0.06 1.54 5.50 -17.28 -0.09 1.45 15 14 N -0.85 -20.77 10.78 55.55 0.60 -20.17 15 15 Si 0.93 18.12 29.56 -169.99 -5.03 13.09 15 16 H -0.26 -5.05 7.11 56.52 0.40 -4.64 15 17 H -0.28 -5.33 7.11 56.52 0.40 -4.93 15 18 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 19 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.07 1.42 6.91 -51.93 -0.36 1.07 15 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.36 6.09 9.06 45.56 0.41 6.50 15 27 H 0.29 6.47 8.30 -40.82 -0.34 6.13 15 LS Contribution 236.95 15.07 3.57 3.57 Total: -1.00 -28.76 236.95 -5.44 -34.20 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -2.24 Total: 14.57 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.93 Total: -7.85 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.42 Total: -47.32 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.23 Total: -10.25 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.76 -5.44 -34.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123914.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.086 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds