Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46712 * 2 1 4 4 C 1.50697 * 109.47312 * 120.00361 * 2 1 3 5 5 N 1.32957 * 126.13540 * 300.30788 * 4 2 1 6 6 C 1.31712 * 110.02054 * 180.17103 * 5 4 2 7 7 O 1.35140 * 125.32055 * 179.81686 * 6 5 4 8 8 N 1.36048 * 109.36559 * 359.56624 * 6 5 4 9 9 H 0.97009 * 126.56536 * 180.24551 * 8 6 5 10 10 C 1.38811 * 106.87194 * 0.25531 * 8 6 5 11 11 C 1.39947 * 126.99695 * 179.97438 * 10 8 6 12 12 H 1.08001 * 119.99827 * 180.02562 * 11 10 8 13 13 C 1.39953 * 119.99877 * 0.03539 * 11 10 8 14 14 N 1.30956 * 119.99907 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99714 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47349 * 59.99279 * 15 13 11 17 17 H 1.48505 * 109.47083 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46794 * 299.98996 * 15 13 11 19 19 H 1.08997 * 109.47031 * 299.99163 * 1 2 3 20 20 H 1.08996 * 109.47476 * 59.99960 * 1 2 3 21 21 H 1.09001 * 109.46661 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47031 * 240.00837 * 2 1 3 23 23 H 1.08993 * 109.47666 * 300.00095 * 3 2 1 24 24 H 1.09005 * 109.47263 * 60.00575 * 3 2 1 25 25 H 1.09006 * 109.46947 * 179.97438 * 3 2 1 26 26 H 0.96700 * 114.00501 * 269.70409 * 7 6 5 27 27 H 0.97003 * 120.00122 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7829 -0.3676 2.4905 6 6 2.3816 -1.2046 3.3126 7 8 2.3368 -1.1411 4.6617 8 7 3.0478 -2.1464 2.5913 9 1 3.5694 -2.8836 2.9455 10 6 2.8384 -1.8503 1.2514 11 6 3.3348 -2.5512 0.1465 12 1 3.1000 -2.2186 -0.8539 13 6 4.1353 -3.6831 0.3378 14 7 4.4201 -4.0861 1.5509 15 14 4.7984 -4.6182 -1.1370 16 1 5.6451 -3.7143 -1.9564 17 1 5.6124 -5.7686 -0.6686 18 1 3.6654 -5.1149 -1.9585 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9564 0.8901 25 1 3.1300 1.4426 0.0005 26 1 3.0450 -0.6126 5.0544 27 1 4.9752 -4.8705 1.6835 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261123914.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = -41.240561 kcal Electronic energy + Delta-G solvation = -12437.584541 eV Core-core repulsion = 10194.499294 eV Total energy + Delta-G solvation = -2243.085248 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.87639 -37.94913 -35.96947 -35.37465 -32.10002 -30.31586 -27.76022 -26.37910 -22.89868 -22.37082 -20.28578 -19.54665 -18.82139 -17.00732 -16.56280 -15.84249 -15.23875 -14.99947 -14.42472 -14.35390 -13.56153 -13.49032 -12.93460 -12.84533 -12.76859 -12.53030 -12.01150 -11.93345 -11.83941 -11.39416 -11.30027 -10.27512 -10.22621 -8.98633 -8.83537 -6.29342 1.23624 1.42256 1.54831 1.77433 2.19412 2.30436 2.69530 3.27405 3.77520 4.31772 4.44063 4.63205 4.92470 4.94530 4.98717 5.16906 5.23640 5.24741 5.41333 5.54470 5.64677 5.81481 5.88901 6.33900 6.47725 6.74819 6.90430 7.61254 7.77847 8.25712 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.030487 B = 0.014474 C = 0.010508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.194162 B = 1934.072963 C = 2663.984689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.011 3.989 3 C -0.123 4.123 4 C -0.145 4.145 5 N -0.476 5.476 6 C 0.214 3.786 7 O -0.455 6.455 8 N -0.576 5.576 9 H 0.419 0.581 10 C 0.181 3.819 11 C -0.460 4.460 12 H 0.107 0.893 13 C 0.024 3.976 14 N -0.868 5.868 15 Si 1.006 2.994 16 H -0.256 1.256 17 H -0.272 1.272 18 H -0.258 1.258 19 H 0.039 0.961 20 H 0.075 0.925 21 H 0.033 0.967 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.389 0.611 27 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 1.850 -3.972 4.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.009 4.009 3 C -0.181 4.181 4 C -0.276 4.276 5 N -0.206 5.206 6 C -0.078 4.078 7 O -0.255 6.255 8 N -0.203 5.203 9 H 0.265 0.735 10 C 0.064 3.936 11 C -0.495 4.495 12 H 0.125 0.875 13 C -0.187 4.187 14 N -0.501 5.501 15 Si 0.826 3.174 16 H -0.180 1.180 17 H -0.197 1.197 18 H -0.182 1.182 19 H 0.058 0.942 20 H 0.094 0.906 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.244 0.756 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.092 2.065 -3.443 4.016 hybrid contribution 1.528 -1.304 0.295 2.031 sum 1.436 0.761 -3.149 3.544 Atomic orbital electron populations 1.21657 0.95006 1.00371 1.01206 1.19097 0.95017 0.94787 0.91984 1.21646 0.99813 0.95403 1.01201 1.20963 1.12630 1.02128 0.91904 1.69175 1.22942 1.26288 1.02179 1.19950 1.08122 0.95865 0.83881 1.84726 1.54474 1.74306 1.12023 1.44148 1.42995 1.26583 1.06617 0.73454 1.19148 0.96656 0.94856 0.82966 1.19057 1.27685 1.09299 0.93416 0.87550 1.26935 0.93991 0.97187 1.00588 1.69001 1.32436 1.24373 1.24249 0.84850 0.78682 0.77192 0.76689 1.18031 1.19707 1.18247 0.94171 0.90602 0.94755 0.90996 0.90722 0.94090 0.94433 0.75578 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 9.18 71.98 0.66 -3.93 15 2 C 0.01 0.44 3.30 -11.54 -0.04 0.40 15 3 C -0.12 -4.41 9.18 71.98 0.66 -3.75 15 4 C -0.15 -7.42 5.74 42.72 0.25 -7.18 15 5 N -0.48 -25.13 11.20 -298.74 -3.35 -28.48 15 6 C 0.21 11.07 9.44 179.58 1.69 12.77 15 7 O -0.45 -19.98 13.62 -84.17 -1.15 -21.12 15 8 N -0.58 -30.68 5.88 -301.86 -1.77 -32.45 15 9 H 0.42 22.00 6.45 -92.70 -0.60 21.40 15 10 C 0.18 9.79 6.75 38.78 0.26 10.05 15 11 C -0.46 -23.43 9.08 23.10 0.21 -23.22 15 12 H 0.11 5.04 6.87 -2.91 -0.02 5.02 15 13 C 0.02 1.12 5.50 85.24 0.47 1.59 15 14 N -0.87 -42.47 10.78 21.84 0.24 -42.23 15 15 Si 1.01 35.97 29.56 68.60 2.03 38.00 15 16 H -0.26 -8.82 7.11 99.48 0.71 -8.11 15 17 H -0.27 -9.36 7.11 99.48 0.71 -8.66 15 18 H -0.26 -8.98 7.11 99.48 0.71 -8.28 15 19 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 20 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 22 H 0.07 2.89 6.91 -2.39 -0.02 2.87 15 23 H 0.07 2.11 8.14 -2.39 -0.02 2.10 15 24 H 0.04 1.53 8.14 -2.38 -0.02 1.51 15 25 H 0.04 1.38 8.14 -2.38 -0.02 1.36 15 26 H 0.39 12.74 9.06 -74.06 -0.67 12.06 15 27 H 0.30 13.11 8.30 -92.71 -0.77 12.34 15 Total: -1.00 -61.02 236.95 0.09 -60.93 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.07 Total: 38.61 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.16 Total: -13.26 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.88 Total: -103.16 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.15 Total: -21.12 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -61.02 0.09 -60.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123914.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.694 kcal (2) G-P(sol) polarization free energy of solvation -61.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds