Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42894 * 114.00031 * 2 1 4 4 H 1.08999 * 109.47264 * 325.12859 * 3 2 1 5 5 C 1.50704 * 109.46996 * 205.13248 * 3 2 1 6 6 H 1.08000 * 119.99889 * 245.22367 * 5 3 2 7 7 C 1.37871 * 120.00191 * 65.22739 * 5 3 2 8 8 N 1.31513 * 120.00270 * 355.03163 * 7 5 3 9 9 Si 1.86802 * 120.00213 * 175.02939 * 7 5 3 10 10 H 1.48505 * 109.46786 * 59.99826 * 9 7 5 11 11 H 1.48502 * 109.47351 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47222 * 299.99964 * 9 7 5 13 13 C 1.50698 * 109.47427 * 85.13020 * 3 2 1 14 14 C 1.34515 * 125.79124 * 219.99732 * 13 3 2 15 15 C 1.41378 * 106.84126 * 180.02562 * 14 13 3 16 16 C 1.34519 * 106.84080 * 0.02562 * 15 14 13 17 17 C 1.50702 * 125.78599 * 179.97438 * 16 15 14 18 18 O 1.34296 * 108.42209 * 359.97438 * 16 15 14 19 19 H 1.09002 * 109.47012 * 184.98474 * 1 2 3 20 20 H 1.09008 * 109.47255 * 304.97916 * 1 2 3 21 21 H 1.08997 * 109.47372 * 64.98535 * 1 2 3 22 22 H 0.96998 * 120.00450 * 180.02562 * 8 7 5 23 23 H 1.07999 * 126.58093 * 359.78016 * 14 13 3 24 24 H 1.08001 * 126.58192 * 180.02562 * 15 14 13 25 25 H 1.09001 * 109.46533 * 180.02562 * 17 16 15 26 26 H 1.08992 * 109.47233 * 300.01074 * 17 16 15 27 27 H 1.09005 * 109.47162 * 60.01641 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3877 1.9803 -0.5875 5 6 3.3896 1.2411 -0.6035 6 1 4.2556 1.4570 0.0046 7 6 3.5461 0.9066 -1.9318 8 7 2.5022 0.5488 -2.6472 9 14 5.2408 0.9617 -2.7155 10 1 6.1472 0.0271 -2.0011 11 1 5.1401 0.5597 -4.1416 12 1 5.7826 2.3415 -2.6268 13 6 2.1043 1.8134 1.4156 14 6 1.8572 3.0732 1.8174 15 6 2.0660 3.1056 3.2154 16 6 2.4287 1.8639 3.5841 17 6 2.7557 1.4214 4.9871 18 8 2.4501 1.0854 2.4900 19 1 -0.3633 -1.0238 0.0893 20 1 -0.3634 0.5892 0.8421 21 1 -0.3634 0.4345 -0.9312 22 1 2.6123 0.3131 -3.5817 23 1 1.5606 3.9018 1.1916 24 1 1.9555 3.9628 3.8629 25 1 3.0159 0.3629 4.9829 26 1 3.5985 2.0009 5.3638 27 1 1.8895 1.5803 5.6294 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261129148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = -38.444394 kcal Electronic energy + Delta-G solvation = -12375.874639 eV Core-core repulsion = 10100.617891 eV Total energy + Delta-G solvation = -2275.256748 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.72591 -36.45656 -32.69612 -32.39390 -31.43872 -28.49391 -25.53554 -24.92200 -22.11030 -20.90535 -19.33989 -16.82974 -16.10755 -15.22112 -14.81396 -14.54598 -14.00702 -13.52638 -12.90007 -12.69770 -12.62750 -12.07648 -11.94687 -11.62747 -11.36104 -10.96028 -10.84671 -10.22734 -10.00665 -9.41905 -9.10162 -8.68316 -8.27922 -7.46731 -6.14958 -4.28193 2.53019 3.29237 3.32309 3.34242 3.41373 3.77621 4.34748 4.99716 5.32425 5.58706 5.64602 5.70515 5.73272 5.92890 6.02998 6.28515 6.42794 6.54023 6.60618 6.68506 6.93363 6.98494 7.31076 7.77366 7.95979 8.05111 8.70651 8.90300 9.41810 10.92116 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.011676 C = 0.010092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.522118 B = 2397.514663 C = 2773.706735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.285 3.715 4 H 0.054 0.946 5 C -0.524 4.524 6 H 0.066 0.934 7 C 0.078 3.922 8 N -0.863 5.863 9 Si 0.904 3.096 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.028 3.972 14 C -0.247 4.247 15 C -0.211 4.211 16 C -0.055 4.055 17 C -0.064 4.064 18 O -0.161 6.161 19 H 0.061 0.939 20 H 0.015 0.985 21 H 0.033 0.967 22 H 0.266 0.734 23 H 0.139 0.861 24 H 0.136 0.864 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 2.570 8.325 8.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.229 3.771 4 H 0.071 0.929 5 C -0.561 4.561 6 H 0.084 0.916 7 C -0.128 4.128 8 N -0.499 5.499 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.199 1.199 13 C -0.024 4.024 14 C -0.266 4.266 15 C -0.230 4.230 16 C -0.105 4.105 17 C -0.121 4.121 18 O -0.057 6.057 19 H 0.080 0.920 20 H 0.034 0.966 21 H 0.052 0.948 22 H 0.075 0.925 23 H 0.157 0.843 24 H 0.154 0.846 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.566 2.031 8.149 8.543 hybrid contribution 0.550 0.549 -0.420 0.883 sum -1.016 2.580 7.729 8.212 Atomic orbital electron populations 1.22481 0.85568 1.00046 0.98175 1.88280 1.15836 1.30434 1.93724 1.18615 0.95422 0.82930 0.80143 0.92850 1.20907 0.90782 1.49645 0.94777 0.91554 1.25051 0.97470 0.93343 0.96952 1.69999 1.29780 1.41770 1.08350 0.86476 0.83649 0.78796 0.78060 1.19843 1.20959 1.19850 1.24549 0.97221 0.90684 0.89951 1.21445 1.12462 0.97864 0.94809 1.21367 1.08714 0.97164 0.95757 1.22286 1.08205 0.90744 0.89302 1.20130 1.01755 1.02364 0.87849 1.84078 1.67487 1.39269 1.14820 0.92026 0.96648 0.94816 0.92472 0.84289 0.84638 0.91058 0.90591 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.80 101.05 1.09 1.86 15 2 O -0.36 -9.92 9.92 -37.34 -0.37 -10.29 15 3 C 0.29 7.67 2.37 -29.03 -0.07 7.60 15 4 H 0.05 1.47 7.88 -51.93 -0.41 1.06 15 5 C -0.52 -15.10 8.74 -34.44 -0.30 -15.40 15 6 H 0.07 1.91 7.75 -52.49 -0.41 1.50 15 7 C 0.08 2.20 5.43 -17.82 -0.10 2.11 15 8 N -0.86 -24.94 12.96 55.43 0.72 -24.22 15 9 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 15 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 13 C 0.03 0.67 5.86 -35.63 -0.21 0.47 15 14 C -0.25 -5.29 10.80 -39.70 -0.43 -5.71 15 15 C -0.21 -3.95 10.81 -39.70 -0.43 -4.38 15 16 C -0.06 -1.06 7.32 -35.62 -0.26 -1.32 15 17 C -0.06 -0.86 10.42 36.01 0.38 -0.49 15 18 O -0.16 -3.81 10.65 3.60 0.04 -3.77 15 19 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 20 H 0.01 0.31 7.95 -51.92 -0.41 -0.10 15 21 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 23 H 0.14 2.72 8.06 -52.49 -0.42 2.30 15 24 H 0.14 2.07 8.06 -52.49 -0.42 1.64 15 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 15 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 LS Contribution 245.66 15.07 3.70 3.70 Total: -1.00 -31.31 245.66 -4.58 -35.90 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -3.32 Total: -2.38 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.33 Total: -15.27 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.72 Total: -24.22 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.33 Total: -14.06 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.31 -4.58 -35.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.546 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds