Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00291 * 2 1 4 4 H 1.08997 * 109.47548 * 180.02562 * 3 2 1 5 5 C 1.50709 * 109.46826 * 300.00131 * 3 2 1 6 6 H 1.08000 * 119.99320 * 119.99707 * 5 3 2 7 7 C 1.37870 * 120.00135 * 299.99814 * 5 3 2 8 8 N 1.31521 * 120.00120 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00214 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47208 * 59.99740 * 9 7 5 11 11 H 1.48503 * 109.47350 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46774 * 300.00134 * 9 7 5 13 13 C 1.50694 * 109.47025 * 59.99919 * 3 2 1 14 14 C 1.41379 * 126.80522 * 5.00357 * 13 3 2 15 15 C 1.35449 * 103.98950 * 180.02562 * 14 13 3 16 16 C 1.50699 * 126.77908 * 180.26147 * 15 14 13 17 17 O 1.34044 * 106.44438 * 359.97438 * 15 14 13 18 18 N 1.20917 * 111.56675 * 0.02562 * 17 15 14 19 19 H 1.09000 * 109.46710 * 299.99906 * 1 2 3 20 20 H 1.08996 * 109.47204 * 59.99515 * 1 2 3 21 21 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 22 22 H 1.00905 * 111.00319 * 236.04760 * 2 1 3 23 23 H 0.96996 * 120.00541 * 179.97438 * 8 7 5 24 24 H 1.07997 * 128.00412 * 0.05803 * 14 13 3 25 25 H 1.08999 * 109.47622 * 179.70816 * 16 15 14 26 26 H 1.09003 * 109.47419 * 299.71462 * 16 15 14 27 27 H 1.09001 * 109.47113 * 59.71081 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0851 1.3424 -0.0005 5 6 1.5122 2.0950 -1.2305 6 1 0.9149 2.9893 -1.1313 7 6 1.8326 1.6153 -2.4828 8 7 2.5603 0.5264 -2.6035 9 14 1.2342 2.5125 -4.0080 10 1 1.7669 3.8987 -4.0078 11 1 1.7097 1.7991 -5.2205 12 1 -0.2503 2.5527 -4.0081 13 6 1.5123 2.0950 1.2304 14 6 0.7640 1.5458 2.2969 15 6 0.5844 2.5889 3.1420 16 6 -0.1491 2.5677 4.4583 17 8 1.1933 3.6423 2.5795 18 7 1.7011 3.3496 1.5219 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8306 -0.5261 -0.7814 23 1 2.7854 0.1886 -3.4844 24 1 0.4166 0.5297 2.4114 25 1 -0.1178 3.5602 4.9078 26 1 -1.1863 2.2768 4.2917 27 1 0.3263 1.8506 5.1276 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134436.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = 61.279092 kcal Electronic energy + Delta-G solvation = -12526.867122 eV Core-core repulsion = 10288.227460 eV Total energy + Delta-G solvation = -2238.639662 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.04491 -36.18750 -33.10360 -32.31433 -31.56600 -27.60443 -27.04691 -24.36385 -22.71765 -21.76577 -18.82269 -16.92425 -16.34092 -16.15803 -14.97904 -14.28456 -13.86639 -13.22562 -13.09044 -13.00078 -12.70020 -12.07341 -11.74782 -11.13398 -10.99327 -10.85798 -10.55492 -10.26393 -10.01571 -9.85970 -8.89823 -8.62839 -8.48174 -7.12978 -6.12357 -4.26776 2.21851 3.23437 3.24840 3.29035 3.36022 3.85704 4.32899 5.01680 5.14956 5.29521 5.57207 5.58113 5.85326 5.99878 6.02808 6.40731 6.46876 6.49108 6.74755 6.97567 7.09089 7.43366 7.71913 8.00471 8.43336 8.80433 8.96494 9.25951 9.43092 10.86487 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.051725 B = 0.011242 C = 0.010190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.195310 B = 2490.052350 C = 2747.056194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.690 5.690 3 C 0.274 3.726 4 H 0.060 0.940 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.896 5.896 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.277 1.277 13 C 0.067 3.933 14 C -0.216 4.216 15 C -0.076 4.076 16 C -0.063 4.063 17 O 0.078 5.922 18 N -0.372 5.372 19 H 0.053 0.947 20 H 0.027 0.973 21 H 0.036 0.964 22 H 0.364 0.636 23 H 0.268 0.732 24 H 0.169 0.831 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 0.182 9.082 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.324 5.324 3 C 0.165 3.835 4 H 0.078 0.922 5 C -0.573 4.573 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.202 1.202 13 C -0.093 4.093 14 C -0.237 4.237 15 C -0.140 4.140 16 C -0.121 4.121 17 O 0.016 5.984 18 N -0.080 5.080 19 H 0.071 0.929 20 H 0.046 0.954 21 H 0.055 0.945 22 H 0.186 0.814 23 H 0.078 0.922 24 H 0.187 0.813 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.251 0.996 9.032 10.032 hybrid contribution -0.851 -0.055 -1.712 1.912 sum -5.103 0.941 7.321 8.973 Atomic orbital electron populations 1.22173 0.91215 0.98477 1.00532 1.60886 1.05947 1.15154 1.50436 1.17486 0.95597 0.85173 0.85224 0.92215 1.21570 1.33810 1.11339 0.90589 0.92575 1.24975 0.94314 0.95083 0.99142 1.69698 1.37434 1.21926 1.24423 0.86512 0.79117 0.79994 0.81634 1.20013 1.21047 1.20233 1.24225 0.96992 0.89447 0.98588 1.22521 1.05402 1.01018 0.94792 1.24379 1.02154 0.88334 0.99099 1.20146 0.98820 1.03532 0.89609 1.84803 1.52352 1.35024 1.26267 1.73765 1.18251 1.17612 0.98343 0.92852 0.95428 0.94482 0.81375 0.92250 0.81347 0.90729 0.90095 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.71 60.06 0.58 1.16 15 2 N -0.69 -16.52 6.51 -116.50 -0.76 -17.28 15 3 C 0.27 7.16 3.02 -70.01 -0.21 6.95 15 4 H 0.06 1.71 8.14 -51.93 -0.42 1.28 15 5 C -0.53 -14.94 7.19 -34.44 -0.25 -15.19 15 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 7 C 0.07 1.85 5.38 -17.82 -0.10 1.75 15 8 N -0.90 -24.78 11.54 55.43 0.64 -24.14 15 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 15 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 13 C 0.07 1.59 6.06 -82.10 -0.50 1.09 15 14 C -0.22 -4.21 8.57 -39.38 -0.34 -4.55 15 15 C -0.08 -1.30 7.49 -35.30 -0.26 -1.56 15 16 C -0.06 -0.69 10.45 36.01 0.38 -0.32 15 17 O 0.08 1.59 11.20 17.17 0.19 1.78 15 18 N -0.37 -8.84 12.05 33.42 0.40 -8.44 15 19 H 0.05 1.08 4.46 -51.93 -0.23 0.85 15 20 H 0.03 0.66 7.09 -51.93 -0.37 0.29 15 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.36 9.27 6.90 -39.29 -0.27 9.00 15 23 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 24 H 0.17 3.00 6.67 -52.49 -0.35 2.65 15 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 LS Contribution 231.91 15.07 3.49 3.49 Total: -1.00 -29.53 231.91 -4.62 -34.15 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.88 Total: 4.56 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.69 Total: -10.67 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.28 Total: -49.85 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.19 Total: 1.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.53 -4.62 -34.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134436.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.425 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds