Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00291 * 2 1 4 4 H 1.08997 * 109.47548 * 180.02562 * 3 2 1 5 5 C 1.50709 * 109.46826 * 300.00131 * 3 2 1 6 6 H 1.08000 * 119.99320 * 119.99707 * 5 3 2 7 7 C 1.37870 * 120.00135 * 299.99814 * 5 3 2 8 8 N 1.31521 * 120.00120 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00214 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47208 * 59.99740 * 9 7 5 11 11 H 1.48503 * 109.47350 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46774 * 300.00134 * 9 7 5 13 13 C 1.50694 * 109.47025 * 59.99919 * 3 2 1 14 14 C 1.41379 * 126.80522 * 5.00357 * 13 3 2 15 15 C 1.35449 * 103.98950 * 180.02562 * 14 13 3 16 16 C 1.50699 * 126.77908 * 180.26147 * 15 14 13 17 17 O 1.34044 * 106.44438 * 359.97438 * 15 14 13 18 18 N 1.20917 * 111.56675 * 0.02562 * 17 15 14 19 19 H 1.09000 * 109.46710 * 299.99906 * 1 2 3 20 20 H 1.08996 * 109.47204 * 59.99515 * 1 2 3 21 21 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 22 22 H 1.00905 * 111.00319 * 236.04760 * 2 1 3 23 23 H 0.96996 * 120.00541 * 179.97438 * 8 7 5 24 24 H 1.07997 * 128.00412 * 0.05803 * 14 13 3 25 25 H 1.08999 * 109.47622 * 179.70816 * 16 15 14 26 26 H 1.09003 * 109.47419 * 299.71462 * 16 15 14 27 27 H 1.09001 * 109.47113 * 59.71081 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0851 1.3424 -0.0005 5 6 1.5122 2.0950 -1.2305 6 1 0.9149 2.9893 -1.1313 7 6 1.8326 1.6153 -2.4828 8 7 2.5603 0.5264 -2.6035 9 14 1.2342 2.5125 -4.0080 10 1 1.7669 3.8987 -4.0078 11 1 1.7097 1.7991 -5.2205 12 1 -0.2503 2.5527 -4.0081 13 6 1.5123 2.0950 1.2304 14 6 0.7640 1.5458 2.2969 15 6 0.5844 2.5889 3.1420 16 6 -0.1491 2.5677 4.4583 17 8 1.1933 3.6423 2.5795 18 7 1.7011 3.3496 1.5219 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8306 -0.5261 -0.7814 23 1 2.7854 0.1886 -3.4844 24 1 0.4166 0.5297 2.4114 25 1 -0.1178 3.5602 4.9078 26 1 -1.1863 2.2768 4.2917 27 1 0.3263 1.8506 5.1276 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134436.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = 39.901581 kcal Electronic energy + Delta-G solvation = -12527.794121 eV Core-core repulsion = 10288.227460 eV Total energy + Delta-G solvation = -2239.566660 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.70770 -38.09118 -34.69194 -33.97241 -33.45146 -29.43534 -28.39770 -26.36828 -24.49361 -23.43220 -20.53899 -18.70160 -18.14687 -17.92016 -16.92884 -16.17610 -15.45751 -14.99985 -14.75117 -14.25913 -13.86086 -13.66621 -13.29486 -12.94606 -12.91002 -12.76772 -12.27489 -12.06716 -11.93550 -11.70532 -10.84373 -10.49235 -10.03187 -9.12084 -8.20255 -6.44760 0.76613 1.32104 1.33337 1.41446 1.56214 2.32052 2.52575 2.94980 3.51040 3.86955 4.16787 4.39816 4.60666 4.74223 4.79685 4.83380 4.97724 5.00249 5.18229 5.27675 5.31841 5.46426 5.53828 5.92799 6.45665 6.67768 6.93940 7.28009 7.67982 8.75088 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.051725 B = 0.011242 C = 0.010190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.195310 B = 2490.052350 C = 2747.056194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.682 5.682 3 C 0.278 3.722 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.035 0.965 7 C 0.028 3.972 8 N -0.911 5.911 9 Si 0.958 3.042 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.273 1.273 13 C 0.034 3.966 14 C -0.231 4.231 15 C -0.047 4.047 16 C -0.062 4.062 17 O 0.082 5.918 18 N -0.409 5.409 19 H 0.069 0.931 20 H -0.001 1.001 21 H 0.066 0.934 22 H 0.353 0.647 23 H 0.272 0.728 24 H 0.186 0.814 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 0.043 10.379 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.314 5.314 3 C 0.168 3.832 4 H 0.037 0.963 5 C -0.592 4.592 6 H 0.054 0.946 7 C -0.173 4.173 8 N -0.550 5.550 9 Si 0.783 3.217 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.198 1.198 13 C -0.124 4.124 14 C -0.253 4.253 15 C -0.111 4.111 16 C -0.119 4.119 17 O 0.018 5.982 18 N -0.117 5.117 19 H 0.088 0.912 20 H 0.017 0.983 21 H 0.085 0.915 22 H 0.173 0.827 23 H 0.081 0.919 24 H 0.204 0.796 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.768 0.848 10.332 11.863 hybrid contribution -0.395 0.003 -1.999 2.038 sum -6.162 0.851 8.333 10.399 Atomic orbital electron populations 1.22222 0.89497 1.00184 0.99948 1.60865 1.07376 1.13696 1.49497 1.17171 0.93424 0.86344 0.86243 0.96319 1.21653 1.34294 1.11106 0.92152 0.94643 1.25653 0.94314 0.95791 1.01528 1.69778 1.37525 1.22503 1.25204 0.85614 0.78719 0.78666 0.78706 1.20378 1.19638 1.19803 1.24084 0.99058 0.90074 0.99215 1.22631 1.05979 1.02486 0.94161 1.25411 0.99483 0.86176 1.00037 1.20508 0.99337 1.05735 0.86334 1.84742 1.52117 1.36004 1.25313 1.73739 1.19792 1.18101 1.00053 0.91215 0.98273 0.91502 0.82671 0.91871 0.79637 0.88720 0.87647 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.34 9.71 127.69 1.24 2.58 15 2 N -0.68 -33.03 6.51 -522.49 -3.40 -36.44 15 3 C 0.28 15.01 3.02 43.42 0.13 15.14 15 4 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 5 C -0.55 -31.94 7.19 25.60 0.18 -31.76 15 6 H 0.04 2.14 7.74 -2.91 -0.02 2.12 15 7 C 0.03 1.56 5.38 84.65 0.46 2.02 15 8 N -0.91 -51.14 11.54 21.45 0.25 -50.89 15 9 Si 0.96 44.59 29.54 68.60 2.03 46.62 15 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 15 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 15 13 C 0.03 1.64 6.06 43.57 0.26 1.90 15 14 C -0.23 -8.66 8.57 22.40 0.19 -8.47 15 15 C -0.05 -1.48 7.49 25.04 0.19 -1.29 15 16 C -0.06 -1.05 10.45 71.24 0.74 -0.31 15 17 O 0.08 3.24 11.20 71.60 0.80 4.04 15 18 N -0.41 -19.73 12.05 -49.55 -0.60 -20.33 15 19 H 0.07 2.72 4.46 -2.39 -0.01 2.71 15 20 H 0.00 -0.07 7.09 -2.39 -0.02 -0.09 15 21 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.35 18.30 6.90 -89.69 -0.62 17.68 15 23 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 24 H 0.19 6.15 6.67 -2.91 -0.02 6.13 15 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 15 26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 27 H 0.11 1.39 8.14 -2.39 -0.02 1.38 15 Total: -1.00 -65.84 231.91 3.04 -62.81 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.56 Total: 14.39 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 3.40 Total: -20.19 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -3.75 Total: -107.66 kcal Atomic # 8 Polarization: 3.24 SS G_CDS: 0.80 Total: 4.04 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -65.84 3.04 -62.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134436.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.707 kcal (2) G-P(sol) polarization free energy of solvation -65.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds