Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34089 * 126.36284 * 2 1 4 4 N 1.34725 * 107.78933 * 180.02562 * 3 2 1 5 5 C 1.31040 * 108.60925 * 0.02562 * 4 3 2 6 6 N 1.38168 * 125.71572 * 179.97438 * 5 4 3 7 7 C 1.46493 * 120.00413 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99486 * 359.97438 * 6 5 4 9 9 C 1.50699 * 109.47055 * 90.00251 * 8 6 5 10 10 H 1.08002 * 120.00451 * 359.97438 * 9 8 6 11 11 C 1.37884 * 120.00145 * 180.02562 * 9 8 6 12 12 N 1.31518 * 119.99382 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00147 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46786 * 60.00239 * 13 11 9 15 15 H 1.48504 * 109.46818 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47326 * 300.00090 * 13 11 9 17 17 O 1.34208 * 108.57745 * 359.97438 * 5 4 3 18 18 H 1.09004 * 109.47650 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.47607 * 300.00048 * 1 2 3 20 20 H 1.09006 * 109.47310 * 59.99925 * 1 2 3 21 21 H 1.08002 * 126.10295 * 0.02562 * 3 2 1 22 22 H 1.08992 * 109.47372 * 89.99944 * 7 6 5 23 23 H 1.08996 * 109.47211 * 210.00178 * 7 6 5 24 24 H 1.09007 * 109.46897 * 329.99741 * 7 6 5 25 25 H 1.08997 * 109.46812 * 210.00005 * 8 6 5 26 26 H 1.09000 * 109.47089 * 329.99996 * 8 6 5 27 27 H 0.97000 * 119.99491 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3020 1.0798 0.0000 4 7 3.5790 0.6507 -0.0006 5 6 3.5799 -0.6597 -0.0015 6 7 4.7022 -1.4656 -0.0028 7 6 4.5573 -2.9234 -0.0031 8 6 6.0371 -0.8621 -0.0038 9 6 6.4962 -0.6557 1.4166 10 1 5.8573 -0.9447 2.2381 11 6 7.7315 -0.0970 1.6677 12 7 8.5092 0.2554 0.6674 13 14 8.3002 0.1595 3.4284 14 1 8.3496 -1.1493 4.1282 15 1 9.6535 0.7711 3.4273 16 1 7.3500 1.0601 4.1293 17 8 2.3080 -1.0881 -0.0009 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5139 -0.8900 21 1 1.9766 2.1096 0.0004 22 1 4.5204 -3.2846 -1.0308 23 1 5.4074 -3.3731 0.5098 24 1 3.6362 -3.1970 0.5116 25 1 6.7343 -1.5233 -0.5185 26 1 6.0011 0.0987 -0.5173 27 1 9.3781 0.6489 0.8440 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137842.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = 32.637251 kcal Electronic energy + Delta-G solvation = -12200.362172 eV Core-core repulsion = 9960.480507 eV Total energy + Delta-G solvation = -2239.881665 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.33647 -36.18624 -33.79486 -32.63323 -31.46301 -27.87508 -26.78883 -24.34958 -22.85407 -21.04359 -19.86812 -16.90902 -16.59465 -15.90752 -15.04226 -14.48292 -14.01238 -13.54442 -13.14095 -12.89836 -12.74540 -12.15602 -11.89649 -11.71084 -11.24630 -10.94867 -10.61820 -10.58574 -10.12441 -9.79308 -9.36995 -8.82441 -8.43194 -6.73267 -6.01906 -4.09407 2.33526 2.88847 3.33074 3.37068 3.41155 3.69755 4.15296 4.44905 5.29226 5.32382 5.45232 5.57692 5.63999 5.69204 5.84006 5.94352 6.20184 6.23086 6.72255 6.88910 7.01137 7.39489 7.74208 7.91304 8.20531 8.21924 8.81966 8.97874 9.55138 11.03144 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.048493 B = 0.009559 C = 0.008911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.268103 B = 2928.399517 C = 3141.482176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.131 4.131 3 C 0.000 4.000 4 N -0.535 5.535 5 C 0.474 3.526 6 N -0.563 5.563 7 C 0.101 3.899 8 C 0.267 3.733 9 C -0.529 4.529 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.895 5.895 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 O -0.239 6.239 18 H 0.065 0.935 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.171 0.829 22 H 0.043 0.957 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.454 -2.875 -1.434 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.185 4.185 3 C -0.139 4.139 4 N -0.273 5.273 5 C 0.177 3.823 6 N -0.289 5.289 7 C -0.043 4.043 8 C 0.150 3.850 9 C -0.568 4.568 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.534 5.534 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 O -0.129 6.129 18 H 0.084 0.916 19 H 0.093 0.907 20 H 0.093 0.907 21 H 0.188 0.812 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.621 -2.568 -1.486 11.028 hybrid contribution -0.208 -0.228 1.037 1.082 sum -10.829 -2.796 -0.449 11.194 Atomic orbital electron populations 1.19945 0.85211 1.02857 1.02417 1.22567 0.93750 0.84284 1.17939 1.22810 0.88302 0.99421 1.03359 1.71044 1.21019 1.06143 1.29135 1.21839 0.79255 0.86869 0.94368 1.46201 1.01773 1.03531 1.77420 1.21553 1.02383 0.79814 1.00529 1.19413 0.73303 0.94640 0.97664 1.21438 1.01589 1.41462 0.92309 0.92475 1.24905 0.96373 0.95134 0.97463 1.69920 1.10579 1.42115 1.30760 0.86540 0.77698 0.78445 0.84623 1.20284 1.21157 1.20177 1.84276 1.16805 1.36768 1.75078 0.91560 0.90707 0.90734 0.81165 0.93824 0.90149 0.92631 0.94221 0.93281 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.43 36.00 0.38 -0.17 15 2 C -0.13 -2.29 7.38 -35.77 -0.26 -2.55 15 3 C 0.00 0.00 11.79 -17.74 -0.21 -0.20 15 4 N -0.53 -12.78 10.62 -14.45 -0.15 -12.93 15 5 C 0.47 10.93 8.43 -87.00 -0.73 10.20 15 6 N -0.56 -12.88 2.95 -185.32 -0.55 -13.42 15 7 C 0.10 1.80 10.60 59.84 0.63 2.43 15 8 C 0.27 7.04 5.29 -5.19 -0.03 7.01 15 9 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 15 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 15 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 15 12 N -0.89 -26.41 13.29 55.43 0.74 -25.67 15 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 15 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 15 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 17 O -0.24 -4.88 10.23 3.68 0.04 -4.84 15 18 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 19 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.17 2.60 8.06 -52.49 -0.42 2.18 15 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.08 1.39 8.07 -51.93 -0.42 0.97 15 24 H 0.05 0.91 7.71 -51.92 -0.40 0.50 15 25 H 0.04 1.05 8.07 -51.93 -0.42 0.63 15 26 H 0.05 1.43 7.64 -51.93 -0.40 1.03 15 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 244.95 15.07 3.69 3.69 Total: -1.00 -32.29 244.95 -5.19 -37.49 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -3.29 Total: -4.26 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.64 Total: 3.05 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.04 Total: -52.03 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.04 Total: -4.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.29 -5.19 -37.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137842.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.124 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds