Wall clock time and date at job start Mon Mar 30 2020 02:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.46946 * 2 1 4 4 C 1.50700 * 109.46898 * 239.99722 * 2 1 3 5 5 H 1.08004 * 120.00172 * 240.00209 * 4 2 1 6 6 C 1.37881 * 119.99853 * 60.00233 * 4 2 1 7 7 N 1.31515 * 120.00110 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47068 * 60.00117 * 8 6 4 10 10 H 1.48494 * 109.47092 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47135 * 300.00075 * 8 6 4 12 12 N 1.46502 * 109.46902 * 120.00044 * 2 1 3 13 13 C 1.46497 * 120.00026 * 60.00144 * 12 2 1 14 14 C 1.38165 * 119.99479 * 239.99676 * 12 2 1 15 15 N 1.31048 * 125.71626 * 359.97438 * 14 12 2 16 16 C 1.34727 * 108.60404 * 180.02562 * 15 14 12 17 17 C 1.34086 * 107.79289 * 0.02562 * 16 15 14 18 18 O 1.34214 * 125.70843 * 180.02562 * 14 12 2 19 19 H 1.09001 * 109.46957 * 59.99988 * 1 2 3 20 20 H 1.09003 * 109.47212 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46886 * 299.99825 * 1 2 3 22 22 H 0.97002 * 120.00070 * 179.97438 * 7 6 4 23 23 H 1.08998 * 109.46901 * 269.99192 * 13 12 2 24 24 H 1.08998 * 109.47567 * 29.99607 * 13 12 2 25 25 H 1.09001 * 109.46925 * 150.00042 * 13 12 2 26 26 H 1.07997 * 126.10214 * 180.02562 * 16 15 14 27 27 H 1.08001 * 126.35818 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8278 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.8127 -0.0191 2.1056 15 7 3.1966 1.2302 2.0100 16 6 3.9582 1.5289 3.0805 17 6 4.0386 0.4306 3.8454 18 8 3.3212 -0.5375 3.2343 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.7087 1.1612 -3.4845 23 1 0.7376 -2.1443 1.9994 24 1 1.5295 -2.5969 0.4708 25 1 2.4629 -2.5818 1.9864 26 1 4.4212 2.4828 3.2857 27 1 4.5764 0.3375 4.7774 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142486.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:26 Heat of formation + Delta-G solvation = 38.045627 kcal Electronic energy + Delta-G solvation = -12466.988861 eV Core-core repulsion = 10227.341721 eV Total energy + Delta-G solvation = -2239.647140 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.32869 -36.65132 -33.80584 -32.90681 -29.64889 -28.55052 -25.50887 -25.20583 -22.09388 -21.24369 -19.46568 -17.21975 -16.40863 -15.85587 -15.32460 -14.92620 -14.12579 -13.34172 -13.15061 -12.51791 -12.43346 -11.68434 -11.43348 -11.07868 -10.91148 -10.75738 -10.57441 -10.28880 -10.17462 -9.63427 -9.35331 -8.83530 -8.45094 -6.77387 -6.08325 -4.17816 2.37431 2.94302 3.28060 3.32994 3.35988 3.65015 4.22181 4.38028 5.21745 5.44219 5.67858 5.71481 6.04567 6.16611 6.34887 6.56015 6.72032 6.83629 6.88123 7.02758 7.38448 7.58461 7.78562 7.99369 8.16945 8.37518 8.73794 8.92719 9.48144 10.95617 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049334 B = 0.010394 C = 0.010205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.425543 B = 2693.145245 C = 2743.177599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.281 3.719 3 H 0.069 0.931 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.554 5.554 13 C 0.100 3.900 14 C 0.473 3.527 15 N -0.551 5.551 16 C -0.003 4.003 17 C -0.155 4.155 18 O -0.242 6.242 19 H 0.097 0.903 20 H 0.031 0.969 21 H 0.013 0.987 22 H 0.265 0.735 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.172 0.828 27 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -2.745 8.073 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.183 3.817 3 H 0.087 0.913 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.280 5.280 13 C -0.044 4.044 14 C 0.176 3.824 15 N -0.291 5.291 16 C -0.142 4.142 17 C -0.227 4.227 18 O -0.131 6.131 19 H 0.115 0.885 20 H 0.050 0.950 21 H 0.032 0.968 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.189 0.811 27 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.932 -2.352 7.348 7.954 hybrid contribution 0.628 -0.879 -0.127 1.088 sum 2.560 -3.231 7.222 8.315 Atomic orbital electron populations 1.22154 0.97963 0.99642 1.01003 1.19067 0.90693 0.94124 0.77833 0.91327 1.21324 1.32121 1.13307 0.90183 0.92162 1.24869 0.94861 0.94982 0.98894 1.69866 1.36131 1.22491 1.24009 0.86509 0.79252 0.79550 0.81806 1.20197 1.21111 1.20219 1.46458 1.49843 1.10867 1.20790 1.21525 0.98852 0.81611 1.02391 1.22109 0.91238 0.86506 0.82556 1.71001 1.21466 1.11160 1.25454 1.23050 0.99775 0.99633 0.91738 1.24144 1.07435 0.88188 1.02933 1.84362 1.55204 1.41228 1.32288 0.88460 0.94998 0.96809 0.92514 0.94007 0.89529 0.92928 0.81084 0.78217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.97 37.16 0.33 -3.24 15 2 C 0.28 7.21 2.71 -69.08 -0.19 7.03 15 3 H 0.07 1.99 7.15 -51.93 -0.37 1.62 15 4 C -0.53 -14.35 7.99 -34.44 -0.28 -14.62 15 5 H 0.06 1.61 7.33 -52.48 -0.38 1.23 15 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 15 7 N -0.89 -24.80 11.32 55.43 0.63 -24.18 15 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 15 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 N -0.55 -12.60 2.85 -177.60 -0.51 -13.10 15 13 C 0.10 1.86 9.59 59.85 0.57 2.43 15 14 C 0.47 10.65 8.44 -86.99 -0.73 9.92 15 15 N -0.55 -12.63 10.34 -14.45 -0.15 -12.78 15 16 C 0.00 -0.06 11.88 -17.74 -0.21 -0.27 15 17 C -0.16 -2.52 12.16 29.27 0.36 -2.17 15 18 O -0.24 -4.76 10.23 3.69 0.04 -4.73 15 19 H 0.10 2.53 6.07 -51.93 -0.32 2.22 15 20 H 0.03 0.71 7.67 -51.93 -0.40 0.31 15 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 15 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.09 1.62 7.02 -51.93 -0.36 1.26 15 25 H 0.05 0.88 7.71 -51.93 -0.40 0.48 15 26 H 0.17 2.39 8.06 -52.49 -0.42 1.97 15 27 H 0.20 2.24 8.06 -52.49 -0.42 1.82 15 LS Contribution 236.28 15.07 3.56 3.56 Total: -1.00 -30.13 236.28 -4.75 -34.88 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.06 Total: -0.35 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.24 Total: 0.78 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.03 Total: -50.06 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: 0.04 Total: -4.73 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.13 -4.75 -34.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142486.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.921 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds