Wall clock time and date at job start Mon Mar 30 2020 02:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.46946 * 2 1 4 4 C 1.50700 * 109.46898 * 239.99722 * 2 1 3 5 5 H 1.08004 * 120.00172 * 240.00209 * 4 2 1 6 6 C 1.37881 * 119.99853 * 60.00233 * 4 2 1 7 7 N 1.31515 * 120.00110 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47068 * 60.00117 * 8 6 4 10 10 H 1.48494 * 109.47092 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47135 * 300.00075 * 8 6 4 12 12 N 1.46502 * 109.46902 * 120.00044 * 2 1 3 13 13 C 1.46497 * 120.00026 * 60.00144 * 12 2 1 14 14 C 1.38165 * 119.99479 * 239.99676 * 12 2 1 15 15 N 1.31048 * 125.71626 * 359.97438 * 14 12 2 16 16 C 1.34727 * 108.60404 * 180.02562 * 15 14 12 17 17 C 1.34086 * 107.79289 * 0.02562 * 16 15 14 18 18 O 1.34214 * 125.70843 * 180.02562 * 14 12 2 19 19 H 1.09001 * 109.46957 * 59.99988 * 1 2 3 20 20 H 1.09003 * 109.47212 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46886 * 299.99825 * 1 2 3 22 22 H 0.97002 * 120.00070 * 179.97438 * 7 6 4 23 23 H 1.08998 * 109.46901 * 269.99192 * 13 12 2 24 24 H 1.08998 * 109.47567 * 29.99607 * 13 12 2 25 25 H 1.09001 * 109.46925 * 150.00042 * 13 12 2 26 26 H 1.07997 * 126.10214 * 180.02562 * 16 15 14 27 27 H 1.08001 * 126.35818 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8278 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.8127 -0.0191 2.1056 15 7 3.1966 1.2302 2.0100 16 6 3.9582 1.5289 3.0805 17 6 4.0386 0.4306 3.8454 18 8 3.3212 -0.5375 3.2343 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.7087 1.1612 -3.4845 23 1 0.7376 -2.1443 1.9994 24 1 1.5295 -2.5969 0.4708 25 1 2.4629 -2.5818 1.9864 26 1 4.4212 2.4828 3.2857 27 1 4.5764 0.3375 4.7774 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142486.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:26 Heat of formation + Delta-G solvation = 17.111700 kcal Electronic energy + Delta-G solvation = -12467.896624 eV Core-core repulsion = 10227.341721 eV Total energy + Delta-G solvation = -2240.554904 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.84136 -38.40273 -35.35119 -34.86780 -31.50907 -30.06461 -27.31103 -27.01570 -23.76790 -22.77724 -21.22066 -18.79590 -18.36475 -17.46415 -17.04927 -16.50647 -15.82943 -15.01128 -14.73043 -14.30510 -13.83563 -13.56798 -13.11648 -12.87676 -12.74536 -12.60487 -12.29458 -12.13979 -12.07250 -11.37492 -11.02224 -10.57259 -10.49252 -8.41045 -8.08165 -6.30293 0.93067 1.35396 1.44706 1.46768 1.54537 2.10740 2.43032 2.81675 3.14287 3.98728 4.28555 4.43543 4.63931 4.70842 4.83617 4.91247 4.94572 5.04471 5.16744 5.43906 5.50624 5.61387 5.84394 6.09333 6.22946 6.58936 6.77531 7.27470 7.41949 8.90178 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049334 B = 0.010394 C = 0.010205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.425543 B = 2693.145245 C = 2743.177599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.290 3.710 3 H 0.025 0.975 4 C -0.545 4.545 5 H 0.058 0.942 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.569 5.569 13 C 0.101 3.899 14 C 0.447 3.553 15 N -0.593 5.593 16 C -0.033 4.033 17 C -0.125 4.125 18 O -0.243 6.243 19 H 0.074 0.926 20 H 0.045 0.955 21 H 0.020 0.980 22 H 0.266 0.734 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.204 0.796 27 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -3.751 9.078 10.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.190 3.810 3 H 0.043 0.957 4 C -0.584 4.584 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.296 5.296 13 C -0.042 4.042 14 C 0.149 3.851 15 N -0.335 5.335 16 C -0.169 4.169 17 C -0.196 4.196 18 O -0.131 6.131 19 H 0.093 0.907 20 H 0.064 0.936 21 H 0.039 0.961 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.221 0.779 27 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.762 -3.372 8.397 9.461 hybrid contribution 0.461 -0.496 -0.294 0.739 sum 3.223 -3.868 8.104 9.541 Atomic orbital electron populations 1.21951 0.97083 1.00183 1.00159 1.18636 0.91256 0.92127 0.78985 0.95674 1.21576 1.32261 1.13369 0.91169 0.92362 1.25669 0.94955 0.95616 1.01745 1.69996 1.36976 1.23653 1.24656 0.85504 0.78338 0.78958 0.78168 1.18868 1.20679 1.20404 1.46253 1.50722 1.12107 1.20499 1.21655 1.00312 0.79614 1.02586 1.22102 0.92485 0.86769 0.83724 1.70939 1.22670 1.12012 1.27884 1.23640 1.00295 1.01903 0.91097 1.25268 1.04555 0.86537 1.03206 1.84380 1.55253 1.42027 1.31462 0.90723 0.93619 0.96105 0.92449 0.92240 0.90122 0.91200 0.77910 0.72703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.93 15 2 C 0.29 15.20 2.71 44.25 0.12 15.32 15 3 H 0.03 1.53 7.15 -2.39 -0.02 1.51 15 4 C -0.55 -29.81 7.99 25.60 0.20 -29.60 15 5 H 0.06 3.13 7.33 -2.91 -0.02 3.11 15 6 C 0.02 1.10 5.30 84.66 0.45 1.55 15 7 N -0.91 -52.00 11.32 21.45 0.24 -51.76 15 8 Si 0.97 42.87 29.54 68.60 2.03 44.90 15 9 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 12 N -0.57 -25.92 2.85 -826.26 -2.35 -28.27 15 13 C 0.10 3.63 9.59 127.77 1.23 4.86 15 14 C 0.45 19.95 8.44 179.08 1.51 21.46 15 15 N -0.59 -27.29 10.34 -313.90 -3.25 -30.53 15 16 C -0.03 -1.11 11.88 83.30 0.99 -0.12 15 17 C -0.13 -3.65 12.16 66.87 0.81 -2.83 15 18 O -0.24 -9.05 10.23 -9.71 -0.10 -9.15 15 19 H 0.07 3.98 6.07 -2.39 -0.01 3.96 15 20 H 0.04 2.03 7.67 -2.39 -0.02 2.01 15 21 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.08 2.96 7.02 -2.39 -0.02 2.94 15 25 H 0.07 2.23 7.71 -2.39 -0.02 2.21 15 26 H 0.20 5.20 8.06 -2.91 -0.02 5.18 15 27 H 0.26 4.24 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -65.87 236.28 3.69 -62.18 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.16 Total: 7.92 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.96 Total: 4.71 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -5.35 Total: -110.56 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.10 Total: -9.15 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -65.87 3.69 -62.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142486.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.292 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds