Wall clock time and date at job start Mon Mar 30 2020 02:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47339 * 2 1 4 4 C 1.35448 * 126.77569 * 89.99774 * 3 2 1 5 5 C 1.41375 * 103.98454 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.80107 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47303 * 5.01064 * 6 5 4 8 8 N 1.46895 * 109.47655 * 245.00492 * 6 5 4 9 9 C 1.50704 * 109.46859 * 125.00808 * 6 5 4 10 10 H 1.08006 * 120.00196 * 34.91633 * 9 6 5 11 11 C 1.37873 * 119.99855 * 214.92152 * 9 6 5 12 12 N 1.31525 * 119.99795 * 184.78306 * 11 9 6 13 13 Si 1.86799 * 120.00475 * 4.77588 * 11 9 6 14 14 H 1.48506 * 109.46844 * 84.87401 * 13 11 9 15 15 H 1.48496 * 109.47485 * 204.87596 * 13 11 9 16 16 H 1.48501 * 109.46912 * 324.88150 * 13 11 9 17 17 N 1.30173 * 106.39842 * 0.26824 * 5 4 3 18 18 O 1.20929 * 111.60258 * 359.53071 * 17 5 4 19 19 H 1.08999 * 109.46809 * 300.00361 * 1 2 3 20 20 H 1.09001 * 109.46999 * 59.99928 * 1 2 3 21 21 H 1.09002 * 109.47425 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46789 * 240.00151 * 2 1 3 23 23 H 1.08999 * 109.46937 * 120.00615 * 2 1 3 24 24 H 1.08001 * 128.00647 * 0.02562 * 4 3 2 25 25 H 1.00897 * 111.00570 * 174.47893 * 8 6 5 26 26 H 1.00908 * 111.00365 * 298.43860 * 8 6 5 27 27 H 0.96998 * 119.99585 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3027 2.1853 1.0849 5 6 2.7378 3.4139 0.5373 6 6 3.1708 4.6394 1.3001 7 1 3.1863 4.4167 2.3669 8 7 2.2273 5.7355 1.0424 9 6 4.5503 5.0485 0.8521 10 1 4.8439 4.9187 -0.1792 11 6 5.4377 5.5882 1.7588 12 7 6.6066 6.0319 1.3506 13 14 4.9799 5.6896 3.5670 14 1 5.3006 4.4010 4.2318 15 1 5.7489 6.7842 4.2117 16 1 3.5260 5.9641 3.6948 17 7 2.6843 3.2791 -0.7564 18 8 2.3003 2.1772 -1.0737 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.2085 1.9179 2.1270 25 1 2.4437 6.5402 1.6112 26 1 2.2135 5.9781 0.0630 27 1 7.2308 6.4119 1.9884 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261146600.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:42 Heat of formation + Delta-G solvation = 21.468924 kcal Electronic energy + Delta-G solvation = -12201.503416 eV Core-core repulsion = 9961.137456 eV Total energy + Delta-G solvation = -2240.365960 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.72985 -37.31130 -35.61660 -34.43657 -33.12885 -30.83467 -28.50092 -25.33536 -24.66792 -23.46434 -20.34203 -19.29418 -18.50744 -17.94245 -16.85230 -16.24078 -15.69626 -15.23219 -14.81412 -14.46163 -14.14880 -13.74718 -13.43508 -13.11896 -12.84422 -12.46878 -12.23034 -11.90073 -11.83112 -11.62512 -10.99298 -10.85164 -10.15182 -9.48747 -8.42387 -6.53846 0.73148 1.32039 1.32523 1.44995 1.52108 2.24675 2.43305 2.93806 3.54110 3.66510 4.15397 4.26841 4.32069 4.40839 4.47621 4.70240 4.76698 5.06607 5.12643 5.20608 5.31987 5.36259 5.43472 6.05992 6.34925 6.52362 6.69651 7.14878 7.62592 8.74537 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.054108 B = 0.009773 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.363400 B = 2864.216474 C = 2958.518590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C -0.035 4.035 4 C -0.245 4.245 5 C 0.040 3.960 6 C 0.252 3.748 7 H 0.070 0.930 8 N -0.838 5.838 9 C -0.554 4.554 10 H 0.020 0.980 11 C 0.019 3.981 12 N -0.940 5.940 13 Si 0.951 3.049 14 H -0.260 1.260 15 H -0.282 1.282 16 H -0.236 1.236 17 N -0.401 5.401 18 O 0.082 5.918 19 H 0.055 0.945 20 H 0.049 0.951 21 H 0.094 0.906 22 H 0.100 0.900 23 H 0.116 0.884 24 H 0.189 0.811 25 H 0.337 0.663 26 H 0.329 0.671 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.631 -11.752 2.959 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 C -0.099 4.099 4 C -0.267 4.267 5 C -0.119 4.119 6 C 0.141 3.859 7 H 0.087 0.913 8 N -0.366 5.366 9 C -0.595 4.595 10 H 0.038 0.962 11 C -0.181 4.181 12 N -0.578 5.578 13 Si 0.773 3.227 14 H -0.185 1.185 15 H -0.208 1.208 16 H -0.159 1.159 17 N -0.108 5.108 18 O 0.018 5.982 19 H 0.074 0.926 20 H 0.068 0.932 21 H 0.112 0.888 22 H 0.118 0.882 23 H 0.134 0.866 24 H 0.207 0.793 25 H 0.149 0.851 26 H 0.140 0.860 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.769 -11.379 2.236 16.523 hybrid contribution 1.399 0.783 0.769 1.778 sum -10.370 -10.597 3.005 15.128 Atomic orbital electron populations 1.21778 0.92648 1.03790 1.02132 1.20327 0.97158 0.83710 1.06172 1.25287 1.00966 0.98331 0.85328 1.22709 1.08652 0.92983 1.02312 1.23912 0.98986 0.99051 0.89906 1.17666 0.88454 0.85338 0.94398 0.91252 1.59465 1.54051 1.11812 1.11231 1.21741 0.99246 1.42427 0.96036 0.96174 1.26103 0.94188 0.93243 1.04567 1.70080 1.09448 1.41012 1.37286 0.85675 0.80278 0.78888 0.77877 1.18510 1.20757 1.15929 1.73748 1.19133 1.00060 1.17872 1.84739 1.61638 1.17548 1.34286 0.92587 0.93226 0.88767 0.88170 0.86560 0.79335 0.85053 0.85999 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.89 71.98 0.71 -1.57 15 2 C -0.04 -0.66 6.50 29.85 0.19 -0.46 15 3 C -0.03 -1.09 6.74 25.04 0.17 -0.92 15 4 C -0.25 -8.79 11.05 22.40 0.25 -8.54 15 5 C 0.04 1.85 6.13 43.58 0.27 2.12 15 6 C 0.25 12.31 2.90 43.43 0.13 12.44 15 7 H 0.07 3.21 5.30 -2.39 -0.01 3.20 15 8 N -0.84 -37.31 9.20 -174.96 -1.61 -38.92 15 9 C -0.55 -32.61 9.11 25.60 0.23 -32.37 15 10 H 0.02 1.37 8.06 -2.91 -0.02 1.35 15 11 C 0.02 1.08 5.47 84.65 0.46 1.54 15 12 N -0.94 -58.65 13.96 21.45 0.30 -58.35 15 13 Si 0.95 42.27 26.99 68.60 1.85 44.12 15 14 H -0.26 -11.05 7.11 99.48 0.71 -10.35 15 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 16 H -0.24 -9.51 6.82 99.48 0.68 -8.83 15 17 N -0.40 -18.99 12.05 -49.55 -0.60 -19.59 15 18 O 0.08 3.23 11.20 71.64 0.80 4.03 15 19 H 0.05 0.93 8.14 -2.39 -0.02 0.91 15 20 H 0.05 0.88 8.14 -2.39 -0.02 0.86 15 21 H 0.09 0.94 8.14 -2.39 -0.02 0.92 15 22 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 23 H 0.12 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.19 5.44 8.06 -2.91 -0.02 5.41 15 25 H 0.34 14.20 9.07 -89.70 -0.81 13.38 15 26 H 0.33 15.12 8.98 -89.69 -0.81 14.31 15 27 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 Total: -1.00 -71.62 240.73 2.70 -68.92 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.45 Total: 27.56 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 2.41 Total: -27.77 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -1.91 Total: -116.86 kcal Atomic # 8 Polarization: 3.23 SS G_CDS: 0.80 Total: 4.03 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.85 Total: 44.12 kcal Total: -71.62 2.70 -68.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146600.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.387 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds