Wall clock time and date at job start Mon Mar 30 2020 02:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41379 * 128.00356 * 2 1 4 4 N 1.30177 * 106.39520 * 179.97438 * 3 2 1 5 5 O 1.20926 * 111.60130 * 359.72093 * 4 3 2 6 6 C 1.34038 * 111.56682 * 0.45473 * 5 4 3 7 7 C 1.50703 * 126.77403 * 179.82673 * 6 5 4 8 8 H 1.09002 * 109.47152 * 164.68265 * 7 6 5 9 9 N 1.46896 * 109.46997 * 44.68203 * 7 6 5 10 10 C 1.53000 * 109.46912 * 284.68493 * 7 6 5 11 11 C 1.50703 * 109.46801 * 184.99967 * 10 7 6 12 12 H 1.07998 * 120.00413 * 0.02562 * 11 10 7 13 13 C 1.37878 * 119.99680 * 179.97438 * 11 10 7 14 14 N 1.31512 * 120.00285 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99651 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47144 * 90.00302 * 15 13 11 17 17 H 1.48507 * 109.46867 * 209.99975 * 15 13 11 18 18 H 1.48496 * 109.47175 * 330.00050 * 15 13 11 19 19 H 1.09002 * 109.46863 * 269.99682 * 1 2 3 20 20 H 1.08994 * 109.47512 * 30.00547 * 1 2 3 21 21 H 1.09007 * 109.46838 * 150.00639 * 1 2 3 22 22 H 1.08000 * 126.80255 * 359.96578 * 3 2 1 23 23 H 1.00900 * 111.00550 * 300.00040 * 9 7 6 24 24 H 1.00896 * 111.00310 * 63.95626 * 9 7 6 25 25 H 1.09002 * 109.47069 * 304.99691 * 10 7 6 26 26 H 1.08991 * 109.47625 * 65.00010 * 10 7 6 27 27 H 0.96998 * 119.99928 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3775 1.1140 0.0000 4 7 3.5878 0.6346 0.0006 5 8 3.5876 -0.5746 0.0064 6 6 2.3411 -1.0672 0.0006 7 6 1.9456 -2.5214 0.0014 8 1 0.8924 -2.6114 0.2674 9 7 2.7621 -3.2503 0.9811 10 6 2.1722 -3.1122 -1.3916 11 6 1.6631 -4.5303 -1.4246 12 1 1.2217 -4.9664 -0.5407 13 6 1.7599 -5.2706 -2.5838 14 7 2.2960 -4.7392 -3.6607 15 14 1.1282 -7.0281 -2.6249 16 1 -0.2988 -7.0317 -3.0362 17 1 1.9256 -7.8181 -3.5973 18 1 1.2556 -7.6316 -1.2741 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8899 -0.5139 21 1 -0.3633 -0.8901 -0.5138 22 1 2.0944 2.1563 -0.0005 23 1 3.7434 -3.1821 0.7564 24 1 2.5820 -2.9217 1.9179 25 1 1.6362 -2.5165 -2.1305 26 1 3.2376 -3.1033 -1.6213 27 1 2.3644 -5.2602 -4.4760 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261155446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:41 Heat of formation + Delta-G solvation = 24.400462 kcal Electronic energy + Delta-G solvation = -12254.802776 eV Core-core repulsion = 10014.563937 eV Total energy + Delta-G solvation = -2240.238839 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.85146 -37.64893 -35.53689 -34.56200 -32.40254 -30.29719 -28.91955 -26.38208 -24.06039 -22.77111 -21.29827 -18.77635 -18.40002 -17.78574 -16.91598 -16.35981 -15.81218 -15.02529 -14.74355 -14.11339 -14.04718 -13.91744 -13.38527 -13.14742 -12.73017 -12.52567 -12.35542 -12.06049 -11.72279 -11.27681 -11.22111 -10.52121 -10.03535 -9.63679 -8.12255 -6.19606 0.48207 1.31765 1.46404 1.47881 1.59583 2.15089 2.49201 3.21952 3.42270 3.64865 3.83911 3.95404 4.27168 4.54937 4.55529 4.77507 4.85559 4.94621 5.03375 5.36386 5.40487 5.56802 5.84753 6.18673 6.35279 6.68519 6.94653 7.24582 7.47914 9.00223 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.053977 B = 0.009036 C = 0.008903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.618247 B = 3098.066131 C = 3144.081313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.210 4.210 3 C -0.001 4.001 4 N -0.401 5.401 5 O 0.067 5.933 6 C -0.066 4.066 7 C 0.192 3.808 8 H 0.114 0.886 9 N -0.822 5.822 10 C 0.040 3.960 11 C -0.506 4.506 12 H 0.070 0.930 13 C -0.006 4.006 14 N -0.941 5.941 15 Si 0.965 3.035 16 H -0.273 1.273 17 H -0.290 1.290 18 H -0.263 1.263 19 H 0.091 0.909 20 H 0.091 0.909 21 H 0.064 0.936 22 H 0.224 0.776 23 H 0.343 0.657 24 H 0.346 0.654 25 H -0.003 1.003 26 H -0.011 1.011 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 8.232 8.711 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.215 4.215 3 C -0.180 4.180 4 N -0.110 5.110 5 O 0.008 5.992 6 C -0.132 4.132 7 C 0.079 3.921 8 H 0.132 0.868 9 N -0.350 5.350 10 C 0.002 3.998 11 C -0.544 4.544 12 H 0.088 0.912 13 C -0.202 4.202 14 N -0.583 5.583 15 Si 0.790 3.210 16 H -0.198 1.198 17 H -0.216 1.216 18 H -0.187 1.187 19 H 0.109 0.891 20 H 0.109 0.891 21 H 0.083 0.917 22 H 0.241 0.759 23 H 0.156 0.844 24 H 0.160 0.840 25 H 0.015 0.985 26 H 0.007 0.993 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.337 8.040 8.314 12.037 hybrid contribution -0.225 0.122 -0.384 0.461 sum -3.562 8.162 7.930 11.925 Atomic orbital electron populations 1.20212 0.85208 1.03922 1.03753 1.21687 1.00148 0.90694 1.08968 1.25530 0.87491 1.03232 1.01763 1.73810 1.24608 0.91514 1.21021 1.84721 1.29908 1.15964 1.68636 1.26376 0.83649 1.00918 1.02244 1.20258 0.98350 0.78491 0.95044 0.86838 1.58674 1.11221 1.60302 1.04848 1.18995 0.95276 0.95530 0.89990 1.21432 1.38144 0.97929 0.96902 0.91157 1.25940 0.95952 1.02898 0.95407 1.70116 1.46862 1.38855 1.02448 0.85439 0.78146 0.79319 0.78054 1.19817 1.21565 1.18725 0.89091 0.89071 0.91660 0.75911 0.84439 0.84042 0.98493 0.99270 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.10 71.24 0.72 -0.94 15 2 C -0.21 -6.31 6.32 -19.74 -0.12 -6.43 15 3 C 0.00 -0.04 12.16 85.71 1.04 1.00 15 4 N -0.40 -14.21 12.07 -59.26 -0.72 -14.92 15 5 O 0.07 2.57 11.19 71.65 0.80 3.37 15 6 C -0.07 -2.37 6.28 25.04 0.16 -2.22 15 7 C 0.19 7.45 3.09 44.17 0.14 7.59 15 8 H 0.11 4.12 7.44 -2.39 -0.02 4.11 15 9 N -0.82 -29.04 8.94 -171.80 -1.54 -30.57 15 10 C 0.04 2.03 4.60 29.85 0.14 2.17 15 11 C -0.51 -27.80 8.84 25.60 0.23 -27.57 15 12 H 0.07 3.72 7.74 -2.91 -0.02 3.70 15 13 C -0.01 -0.31 5.46 84.66 0.46 0.15 15 14 N -0.94 -57.39 13.29 21.45 0.28 -57.10 15 15 Si 0.97 44.22 29.54 68.60 2.03 46.24 15 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 17 H -0.29 -13.22 7.11 99.48 0.71 -12.52 15 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 15 19 H 0.09 1.63 8.14 -2.39 -0.02 1.62 15 20 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.06 1.65 7.71 -2.38 -0.02 1.63 15 22 H 0.22 4.27 8.06 -2.91 -0.02 4.25 15 23 H 0.34 12.27 8.98 -89.69 -0.81 11.47 15 24 H 0.35 9.81 9.06 -89.70 -0.81 9.00 15 25 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 15 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 15 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -66.30 243.06 3.19 -63.11 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -0.43 Total: 16.13 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 2.76 Total: -26.25 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -1.97 Total: -102.60 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.80 Total: 3.37 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.30 3.19 -63.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.508 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds