Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46778 * 2 1 4 4 N 1.46495 * 109.47020 * 239.99753 * 2 1 3 5 5 C 1.36941 * 120.00262 * 241.05902 * 4 2 1 6 6 H 1.08004 * 119.99931 * 209.96179 * 5 4 2 7 7 C 1.38741 * 119.99695 * 29.96273 * 5 4 2 8 8 N 1.31591 * 120.00190 * 17.22610 * 7 5 4 9 9 Si 1.86806 * 119.99719 * 197.22966 * 7 5 4 10 10 H 1.48499 * 109.47080 * 60.00017 * 9 7 5 11 11 H 1.48499 * 109.46797 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46897 * 299.99742 * 9 7 5 13 13 C 1.37884 * 120.00068 * 61.05986 * 4 2 1 14 14 N 1.31185 * 125.71347 * 359.68912 * 13 4 2 15 15 C 1.34434 * 108.63377 * 179.89519 * 14 13 4 16 16 C 1.34374 * 107.80688 * 0.36931 * 15 14 13 17 17 O 1.34310 * 125.71722 * 179.97438 * 13 4 2 18 18 H 1.08993 * 109.47421 * 60.00049 * 1 2 3 19 19 H 1.09004 * 109.46950 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46924 * 299.99888 * 1 2 3 21 21 H 1.09003 * 109.46873 * 119.99973 * 2 1 3 22 22 H 1.09000 * 109.47302 * 60.00342 * 3 2 1 23 23 H 1.09005 * 109.46444 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46973 * 299.99325 * 3 2 1 25 25 H 0.97001 * 120.00332 * 179.97438 * 8 7 5 26 26 H 1.08003 * 126.09428 * 180.14648 * 15 14 13 27 27 H 1.08002 * 126.36756 * 179.77789 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.7876 -1.8166 -1.0706 6 1 3.5254 -2.0531 -1.8230 7 6 2.6191 -2.6534 0.0231 8 7 1.5259 -2.5728 0.7511 9 14 3.9444 -3.8945 0.4624 10 1 5.2151 -3.1813 0.7487 11 1 3.5256 -4.6618 1.6628 12 1 4.1457 -4.8272 -0.6754 13 6 1.7033 -0.2070 -2.4483 14 7 0.9732 0.8539 -2.6982 15 6 0.8874 1.0122 -4.0304 16 6 1.5782 0.0150 -4.6081 17 8 2.0881 -0.7462 -3.6167 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.6766 1.9563 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.4079 -3.1581 1.5155 26 1 0.3548 1.7986 -4.5446 27 1 1.7028 -0.1473 -5.6686 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157216.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = 41.732632 kcal Electronic energy + Delta-G solvation = -12830.025851 eV Core-core repulsion = 10590.538591 eV Total energy + Delta-G solvation = -2239.487260 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.69713 -36.98807 -33.34134 -32.20188 -30.85430 -27.83645 -26.05008 -24.48343 -21.58245 -21.10906 -19.27750 -17.78249 -15.91930 -15.34894 -14.99925 -14.32753 -14.17332 -13.23997 -12.82059 -12.58822 -11.88306 -11.82932 -11.28619 -11.21706 -11.09967 -10.71980 -10.40488 -10.22083 -9.91830 -9.80991 -9.24091 -8.91411 -8.43032 -6.76319 -6.37093 -3.93713 2.85070 3.18162 3.19141 3.21066 3.61020 4.08151 4.15868 4.95045 5.02892 5.81512 6.10523 6.22780 6.27214 6.31706 6.56218 6.76903 6.89714 6.94454 7.02150 7.17273 7.34957 7.42763 7.48486 7.56671 8.08899 8.48462 8.99387 9.23469 9.75177 10.62415 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.014718 C = 0.011924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.531418 B = 1902.024804 C = 2347.718264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.181 3.819 3 C -0.173 4.173 4 N -0.397 5.397 5 C -0.319 4.319 6 H 0.091 0.909 7 C 0.035 3.965 8 N -0.864 5.864 9 Si 0.928 3.072 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.451 3.549 14 N -0.592 5.592 15 C -0.004 4.004 16 C -0.184 4.184 17 O -0.235 6.235 18 H 0.061 0.939 19 H 0.065 0.935 20 H 0.039 0.961 21 H 0.110 0.890 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.271 0.729 26 H 0.160 0.840 27 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 3.154 -2.024 3.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.078 3.922 3 C -0.232 4.232 4 N -0.109 5.109 5 C -0.447 4.447 6 H 0.108 0.892 7 C -0.171 4.171 8 N -0.501 5.501 9 Si 0.754 3.246 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.156 3.844 14 N -0.335 5.335 15 C -0.144 4.144 16 C -0.258 4.258 17 O -0.124 6.124 18 H 0.080 0.920 19 H 0.084 0.916 20 H 0.058 0.942 21 H 0.128 0.872 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.177 0.823 27 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.199 3.302 -1.218 3.525 hybrid contribution 0.821 -1.077 -0.521 1.451 sum 1.020 2.224 -1.740 3.002 Atomic orbital electron populations 1.22055 0.96260 1.02434 1.00402 1.20817 0.93797 0.90041 0.87502 1.22350 1.00288 0.98337 1.02202 1.41761 1.47725 1.25079 0.96336 1.19457 1.14137 1.00744 1.10392 0.89177 1.25341 0.96739 0.97354 0.97624 1.70058 1.23325 1.38380 1.18329 0.85971 0.80536 0.79908 0.78156 1.19774 1.20731 1.19790 1.22454 0.90610 0.88563 0.82752 1.70781 1.27348 1.21064 1.14330 1.22819 1.01343 0.99486 0.90725 1.23914 1.10689 0.98603 0.92591 1.84393 1.63940 1.49550 1.14535 0.91964 0.91576 0.94186 0.87207 0.93190 0.93842 0.90590 0.91933 0.82268 0.79448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.01 37.16 0.33 -3.16 15 2 C 0.18 4.31 2.30 -67.93 -0.16 4.15 15 3 C -0.17 -3.63 9.13 37.16 0.34 -3.29 15 4 N -0.40 -10.42 2.59 -110.03 -0.28 -10.70 15 5 C -0.32 -8.60 9.31 -15.08 -0.14 -8.74 15 6 H 0.09 2.43 7.81 -52.48 -0.41 2.02 15 7 C 0.03 0.89 4.88 -17.47 -0.09 0.81 15 8 N -0.86 -22.56 10.40 55.49 0.58 -21.98 15 9 Si 0.93 19.91 29.59 -169.99 -5.03 14.88 15 10 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 13 C 0.45 11.60 7.65 -87.15 -0.67 10.93 15 14 N -0.59 -14.03 7.46 -14.47 -0.11 -14.14 15 15 C 0.00 -0.07 11.88 -17.78 -0.21 -0.29 15 16 C -0.18 -3.72 12.17 29.37 0.36 -3.36 15 17 O -0.23 -5.84 10.41 3.77 0.04 -5.80 15 18 H 0.06 1.45 6.32 -51.93 -0.33 1.12 15 19 H 0.07 1.65 7.46 -51.93 -0.39 1.26 15 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.11 2.77 5.81 -51.93 -0.30 2.47 15 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.04 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.08 1.66 6.18 -51.93 -0.32 1.34 15 25 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 26 H 0.16 2.56 8.06 -52.48 -0.42 2.14 15 27 H 0.19 2.90 8.06 -52.49 -0.42 2.47 15 LS Contribution 230.52 15.07 3.47 3.47 Total: -1.00 -28.54 230.52 -4.56 -33.10 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.00 Total: 4.11 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.23 Total: -2.94 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.18 Total: -46.82 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: 0.04 Total: -5.80 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.54 -4.56 -33.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157216.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.828 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds