Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46778 * 2 1 4 4 N 1.46495 * 109.47020 * 239.99753 * 2 1 3 5 5 C 1.36941 * 120.00262 * 241.05902 * 4 2 1 6 6 H 1.08004 * 119.99931 * 209.96179 * 5 4 2 7 7 C 1.38741 * 119.99695 * 29.96273 * 5 4 2 8 8 N 1.31591 * 120.00190 * 17.22610 * 7 5 4 9 9 Si 1.86806 * 119.99719 * 197.22966 * 7 5 4 10 10 H 1.48499 * 109.47080 * 60.00017 * 9 7 5 11 11 H 1.48499 * 109.46797 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46897 * 299.99742 * 9 7 5 13 13 C 1.37884 * 120.00068 * 61.05986 * 4 2 1 14 14 N 1.31185 * 125.71347 * 359.68912 * 13 4 2 15 15 C 1.34434 * 108.63377 * 179.89519 * 14 13 4 16 16 C 1.34374 * 107.80688 * 0.36931 * 15 14 13 17 17 O 1.34310 * 125.71722 * 179.97438 * 13 4 2 18 18 H 1.08993 * 109.47421 * 60.00049 * 1 2 3 19 19 H 1.09004 * 109.46950 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46924 * 299.99888 * 1 2 3 21 21 H 1.09003 * 109.46873 * 119.99973 * 2 1 3 22 22 H 1.09000 * 109.47302 * 60.00342 * 3 2 1 23 23 H 1.09005 * 109.46444 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46973 * 299.99325 * 3 2 1 25 25 H 0.97001 * 120.00332 * 179.97438 * 8 7 5 26 26 H 1.08003 * 126.09428 * 180.14648 * 15 14 13 27 27 H 1.08002 * 126.36756 * 179.77789 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.7876 -1.8166 -1.0706 6 1 3.5254 -2.0531 -1.8230 7 6 2.6191 -2.6534 0.0231 8 7 1.5259 -2.5728 0.7511 9 14 3.9444 -3.8945 0.4624 10 1 5.2151 -3.1813 0.7487 11 1 3.5256 -4.6618 1.6628 12 1 4.1457 -4.8272 -0.6754 13 6 1.7033 -0.2070 -2.4483 14 7 0.9732 0.8539 -2.6982 15 6 0.8874 1.0122 -4.0304 16 6 1.5782 0.0150 -4.6081 17 8 2.0881 -0.7462 -3.6167 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.6766 1.9563 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.4079 -3.1581 1.5155 26 1 0.3548 1.7986 -4.5446 27 1 1.7028 -0.1473 -5.6686 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157216.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = 23.752159 kcal Electronic energy + Delta-G solvation = -12830.805543 eV Core-core repulsion = 10590.538591 eV Total energy + Delta-G solvation = -2240.266952 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.48403 -38.83377 -35.15957 -34.08979 -32.69018 -29.58918 -27.80321 -26.40314 -23.38362 -22.82927 -21.13396 -19.63372 -17.77955 -17.16458 -16.79987 -16.17546 -15.89425 -14.93345 -14.59950 -14.40326 -13.63864 -13.53578 -13.07264 -13.02578 -12.83607 -12.48678 -12.10447 -12.06426 -11.70280 -11.64857 -11.07599 -10.71060 -10.28367 -8.59820 -8.26025 -5.91890 1.13226 1.43424 1.49636 1.54058 1.87301 2.31043 2.37637 3.00886 3.34236 4.15883 4.39765 4.54500 4.59855 4.68224 4.89559 4.94692 5.16156 5.16348 5.26661 5.41074 5.48047 5.63090 5.70777 5.73766 6.17968 6.61593 7.13394 7.33841 7.87678 8.70048 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.014718 C = 0.011924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.531418 B = 1902.024804 C = 2347.718264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.177 3.823 3 C -0.161 4.161 4 N -0.417 5.417 5 C -0.349 4.349 6 H 0.077 0.923 7 C -0.001 4.001 8 N -0.885 5.885 9 Si 0.994 3.006 10 H -0.267 1.267 11 H -0.273 1.273 12 H -0.273 1.273 13 C 0.424 3.576 14 N -0.597 5.597 15 C -0.016 4.016 16 C -0.177 4.177 17 O -0.261 6.261 18 H 0.054 0.946 19 H 0.036 0.964 20 H 0.066 0.934 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.274 0.726 26 H 0.203 0.797 27 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 3.639 -2.479 4.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.075 3.925 3 C -0.219 4.219 4 N -0.131 5.131 5 C -0.477 4.477 6 H 0.095 0.905 7 C -0.204 4.204 8 N -0.522 5.522 9 Si 0.817 3.183 10 H -0.192 1.192 11 H -0.198 1.198 12 H -0.198 1.198 13 C 0.129 3.871 14 N -0.342 5.342 15 C -0.155 4.155 16 C -0.249 4.249 17 O -0.151 6.151 18 H 0.073 0.927 19 H 0.056 0.944 20 H 0.085 0.915 21 H 0.110 0.890 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.220 0.780 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.295 3.809 -1.701 4.182 hybrid contribution 0.717 -1.165 -0.521 1.464 sum 1.013 2.644 -2.222 3.599 Atomic orbital electron populations 1.21900 0.95805 1.00741 1.01280 1.20854 0.94133 0.91110 0.86359 1.22223 0.99914 0.96623 1.03150 1.41901 1.48633 1.25452 0.97098 1.19565 1.14968 1.02027 1.11168 0.90522 1.26138 0.98569 0.98741 0.96989 1.70151 1.24481 1.39033 1.18491 0.84988 0.77965 0.77486 0.77865 1.19154 1.19814 1.19797 1.22770 0.91896 0.89423 0.83027 1.70777 1.26732 1.20253 1.16414 1.23527 1.01682 1.00724 0.89533 1.24936 1.08898 0.97390 0.93693 1.84391 1.64490 1.50878 1.15365 0.92664 0.94443 0.91496 0.89031 0.90231 0.94285 0.91453 0.91649 0.78023 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.32 9.01 71.98 0.65 -5.67 15 2 C 0.18 8.50 2.30 44.99 0.10 8.60 15 3 C -0.16 -6.60 9.13 71.98 0.66 -5.95 15 4 N -0.42 -22.28 2.59 -612.58 -1.59 -23.86 15 5 C -0.35 -19.26 9.31 84.02 0.78 -18.47 15 6 H 0.08 4.28 7.81 -2.91 -0.02 4.26 15 7 C 0.00 -0.05 4.88 84.85 0.41 0.36 15 8 N -0.88 -46.72 10.40 21.64 0.23 -46.50 15 9 Si 0.99 40.93 29.59 68.60 2.03 42.96 15 10 H -0.27 -10.65 7.11 99.48 0.71 -9.95 15 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 13 C 0.42 21.88 7.65 179.13 1.37 23.25 15 14 N -0.60 -27.77 7.46 -313.84 -2.34 -30.11 15 15 C -0.02 -0.62 11.88 83.41 0.99 0.37 15 16 C -0.18 -6.75 12.17 66.94 0.81 -5.93 15 17 O -0.26 -12.93 10.41 -9.42 -0.10 -13.03 15 18 H 0.05 2.55 6.32 -2.39 -0.02 2.54 15 19 H 0.04 1.88 7.46 -2.38 -0.02 1.86 15 20 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 21 H 0.09 4.69 5.81 -2.39 -0.01 4.67 15 22 H 0.08 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.04 1.59 8.14 -2.38 -0.02 1.57 15 24 H 0.07 2.88 6.18 -2.39 -0.01 2.86 15 25 H 0.27 13.55 8.31 -92.71 -0.77 12.78 15 26 H 0.20 5.69 8.06 -2.91 -0.02 5.66 15 27 H 0.24 6.28 8.06 -2.91 -0.02 6.26 15 Total: -1.00 -61.86 230.52 5.17 -56.69 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.16 Total: 17.29 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.78 Total: -3.44 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -3.70 Total: -100.47 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.10 Total: -13.03 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -61.86 5.17 -56.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157216.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.443 kcal (2) G-P(sol) polarization free energy of solvation -61.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds