Wall clock time and date at job start Mon Mar 30 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.39933 * 125.73348 * 84.71490 * 4 2 1 6 6 C 1.35909 * 107.92680 * 179.86671 * 5 4 2 7 7 O 1.35680 * 126.28660 * 180.11137 * 6 5 4 8 8 N 1.36612 * 107.43231 * 0.39272 * 6 5 4 9 9 C 1.37379 * 126.14134 * 179.77654 * 8 6 5 10 10 H 1.08000 * 119.99479 * 359.97438 * 9 8 6 11 11 C 1.38926 * 119.99761 * 179.97438 * 9 8 6 12 12 N 1.31339 * 120.00350 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99720 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46840 * 60.00184 * 13 11 9 15 15 H 1.48496 * 109.46851 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46844 * 300.00023 * 13 11 9 17 17 N 1.31007 * 125.73661 * 265.02501 * 4 2 1 18 18 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 20 20 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 21 21 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 22 22 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 23 23 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 24 24 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 25 25 H 1.07996 * 126.03671 * 359.97438 * 5 4 2 26 26 H 0.96698 * 114.00257 * 270.33327 * 7 6 5 27 27 H 0.96999 * 120.00168 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.2061 -0.1335 -2.4935 6 6 2.6763 -1.0947 -3.3314 7 8 2.9764 -0.9380 -4.6453 8 7 2.7853 -2.2493 -2.6094 9 6 3.2204 -3.4632 -3.0833 10 1 3.5149 -3.5650 -4.1174 11 6 3.2815 -4.5596 -2.2323 12 7 2.9237 -4.4356 -0.9747 13 14 3.8724 -6.2104 -2.8769 14 1 5.2604 -6.0744 -3.3870 15 1 3.8438 -7.2095 -1.7787 16 1 2.9823 -6.6594 -3.9774 17 7 2.3743 -1.9732 -1.2990 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 1.8934 -0.5139 0.8900 22 1 1.6768 1.9562 0.8901 23 1 3.1301 1.4425 0.0005 24 1 1.6768 1.9563 -0.8899 25 1 2.0040 0.8945 -2.7557 26 1 2.2334 -1.1053 -5.2411 27 1 2.9660 -5.2012 -0.3806 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261171939.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:25 Heat of formation + Delta-G solvation = 21.742380 kcal Electronic energy + Delta-G solvation = -12380.996309 eV Core-core repulsion = 10140.642207 eV Total energy + Delta-G solvation = -2240.354102 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.64845 -36.08707 -34.76775 -33.07470 -29.81788 -27.59970 -26.47144 -24.91712 -21.84263 -20.15638 -18.29584 -18.00753 -16.30046 -15.05331 -14.58957 -14.10175 -13.37885 -13.06221 -12.92375 -12.86321 -12.04363 -11.90093 -11.61070 -11.18069 -11.09602 -10.71220 -10.56488 -10.46825 -10.22063 -9.99859 -9.33180 -8.58174 -7.91961 -7.09644 -6.55302 -4.24615 2.95712 3.06129 3.09404 3.44283 3.82668 4.12737 4.49473 4.98476 5.35886 5.62500 5.82948 5.88727 6.14325 6.26188 6.36926 6.47527 6.53183 6.74167 6.89313 6.91280 7.11349 7.16717 7.48654 7.77247 8.16643 8.35794 8.73944 9.45372 9.68751 10.40536 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043270 B = 0.011848 C = 0.009829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.945040 B = 2362.722788 C = 2848.079296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.000 4.000 3 C -0.135 4.135 4 C -0.009 4.009 5 C -0.302 4.302 6 C 0.127 3.873 7 O -0.470 6.470 8 N -0.155 5.155 9 C -0.322 4.322 10 H 0.115 0.885 11 C 0.047 3.953 12 N -0.772 5.772 13 Si 0.934 3.066 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.267 1.267 17 N -0.246 5.246 18 H 0.053 0.947 19 H 0.047 0.953 20 H 0.051 0.949 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.119 0.881 26 H 0.364 0.636 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 3.684 -0.517 4.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 C -0.193 4.193 4 C -0.163 4.163 5 C -0.335 4.335 6 C -0.044 4.044 7 O -0.270 6.270 8 N 0.069 4.931 9 C -0.454 4.454 10 H 0.133 0.867 11 C -0.170 4.170 12 N -0.399 5.399 13 Si 0.758 3.242 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.192 1.192 17 N -0.080 5.080 18 H 0.073 0.927 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.089 0.911 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.137 0.863 26 H 0.216 0.784 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.039 2.632 0.456 3.361 hybrid contribution -0.211 -0.204 -1.138 1.175 sum -2.250 2.428 -0.682 3.380 Atomic orbital electron populations 1.21758 0.95418 1.01625 1.00488 1.19145 0.94522 0.94104 0.94301 1.21751 1.01032 0.95823 1.00703 1.21634 1.06329 0.93550 0.94741 1.20162 1.20186 0.98939 0.94249 1.18708 1.13700 0.88110 0.83872 1.84841 1.39060 1.90095 1.13046 1.45459 1.35810 1.05849 1.05966 1.19887 1.44536 0.83667 0.97329 0.86706 1.25629 0.95912 1.00392 0.95046 1.70219 1.34877 1.31182 1.03613 0.85901 0.79724 0.79783 0.78800 1.19119 1.20094 1.19180 1.78296 1.22019 1.12895 0.94820 0.92740 0.93434 0.92994 0.91087 0.93380 0.92889 0.92694 0.86331 0.78358 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.18 37.16 0.34 -1.98 15 2 C 0.00 -0.01 3.38 -91.77 -0.31 -0.32 15 3 C -0.14 -2.22 8.78 37.16 0.33 -1.89 15 4 C -0.01 -0.21 6.12 -82.31 -0.50 -0.72 15 5 C -0.30 -7.34 9.99 -39.78 -0.40 -7.74 15 6 C 0.13 3.30 7.97 -16.26 -0.13 3.17 15 7 O -0.47 -10.57 13.56 -18.74 -0.25 -10.83 15 8 N -0.15 -4.43 3.74 -11.64 -0.04 -4.48 15 9 C -0.32 -8.94 10.19 -14.81 -0.15 -9.09 15 10 H 0.12 2.96 7.83 -52.49 -0.41 2.55 15 11 C 0.05 1.24 5.50 -17.51 -0.10 1.15 15 12 N -0.77 -21.65 11.82 55.49 0.66 -21.00 15 13 Si 0.93 19.43 29.55 -169.99 -5.02 14.41 15 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 17 N -0.25 -7.07 10.41 33.71 0.35 -6.72 15 18 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.05 0.87 7.29 -51.93 -0.38 0.49 15 25 H 0.12 2.56 7.42 -52.49 -0.39 2.17 15 26 H 0.36 6.27 9.06 45.56 0.41 6.68 15 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 LS Contribution 240.27 15.07 3.62 3.62 Total: -1.00 -32.02 240.27 -4.05 -36.07 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.44 Total: 6.34 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.92 Total: -17.42 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.96 Total: -32.20 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.25 Total: -10.83 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.02 -4.05 -36.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171939.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.811 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds