Wall clock time and date at job start Mon Mar 30 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32865 * 126.04021 * 2 1 4 4 N 1.38692 * 107.91252 * 180.26017 * 3 2 1 5 5 C 1.46505 * 125.98331 * 179.97438 * 4 3 2 6 6 C 1.34755 * 108.03425 * 359.97438 * 4 3 2 7 7 O 1.21797 * 125.94933 * 180.02562 * 6 4 3 8 8 N 1.34759 * 108.10716 * 0.02562 * 6 4 3 9 9 C 1.46498 * 125.98704 * 180.02562 * 8 6 4 10 10 C 1.50697 * 109.47324 * 269.95555 * 9 8 6 11 11 H 1.08000 * 119.99975 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99922 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99771 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00154 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47204 * 89.99960 * 14 12 10 16 16 H 1.48500 * 109.46971 * 209.99933 * 14 12 10 17 17 H 1.48506 * 109.47140 * 329.99751 * 14 12 10 18 18 H 1.08995 * 109.47289 * 269.69667 * 1 2 3 19 19 H 1.09000 * 109.46674 * 29.69398 * 1 2 3 20 20 H 1.09001 * 109.46776 * 149.68806 * 1 2 3 21 21 H 1.08002 * 126.04048 * 0.26028 * 3 2 1 22 22 H 1.08993 * 109.46784 * 269.99951 * 5 4 3 23 23 H 1.09001 * 109.46952 * 30.00299 * 5 4 3 24 24 H 1.08998 * 109.46749 * 149.99762 * 5 4 3 25 25 H 1.09003 * 109.47344 * 29.96052 * 9 8 6 26 26 H 1.09005 * 109.47386 * 149.95341 * 9 8 6 27 27 H 0.97005 * 119.99705 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2888 1.0744 0.0000 4 7 3.6069 0.6428 -0.0060 5 6 4.7938 1.5017 -0.0086 6 6 3.6047 -0.7047 -0.0090 7 8 4.5895 -1.4213 -0.0139 8 7 2.3231 -1.1214 -0.0056 9 6 1.8711 -2.5149 -0.0067 10 6 1.7104 -2.9899 -1.4278 11 1 1.9241 -2.3208 -2.2482 12 6 1.2917 -4.2789 -1.6807 13 7 1.1519 -4.6936 -2.9210 14 14 0.9227 -5.4365 -0.2618 15 1 -0.5069 -5.3116 0.1200 16 1 1.2039 -6.8342 -0.6773 17 1 1.7780 -5.0838 0.8999 18 1 -0.3633 -0.0054 1.0276 19 1 -0.3633 0.8927 -0.5091 20 1 -0.3633 -0.8872 -0.5187 21 1 1.9565 2.1020 0.0040 22 1 5.0842 1.7169 -1.0368 23 1 4.5684 2.4345 0.5083 24 1 5.6117 0.9925 0.5010 25 1 2.6075 -3.1363 0.5030 26 1 0.9144 -2.5870 0.5108 27 1 0.8577 -5.6006 -3.0989 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261185653.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:14 Heat of formation + Delta-G solvation = -10.247278 kcal Electronic energy + Delta-G solvation = -12443.566881 eV Core-core repulsion = 10201.825603 eV Total energy + Delta-G solvation = -2241.741278 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.06769 -37.86402 -36.64159 -34.75754 -32.41576 -30.84040 -28.40772 -26.28454 -24.55583 -21.95591 -21.08392 -19.27218 -18.09884 -17.24665 -16.55507 -16.17851 -15.97861 -15.11033 -14.55551 -14.38553 -14.03268 -13.89221 -13.77178 -13.36907 -13.27191 -12.67405 -12.56612 -12.28754 -11.92121 -11.81370 -11.33584 -10.88524 -10.46899 -8.44027 -8.39978 -6.50041 1.30910 1.34551 1.44858 1.46712 1.54203 1.98108 2.26830 2.78384 2.92174 3.96894 4.28666 4.44433 4.47605 4.53709 4.61647 4.63266 4.76891 4.94341 5.06791 5.26103 5.30879 5.41294 5.58310 6.02666 6.25107 6.50729 6.68994 7.12083 7.43595 8.76208 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.045215 B = 0.011667 C = 0.010554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.115095 B = 2399.314087 C = 2652.288394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.000 4.000 3 C -0.021 4.021 4 N -0.537 5.537 5 C 0.098 3.902 6 C 0.612 3.388 7 O -0.638 6.638 8 N -0.521 5.521 9 C 0.240 3.760 10 C -0.549 4.549 11 H 0.023 0.977 12 C 0.018 3.982 13 N -0.939 5.939 14 Si 0.951 3.049 15 H -0.242 1.242 16 H -0.277 1.277 17 H -0.256 1.256 18 H 0.092 0.908 19 H 0.110 0.890 20 H 0.051 0.949 21 H 0.232 0.768 22 H 0.069 0.931 23 H 0.126 0.874 24 H 0.066 0.934 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 13.676 9.178 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C -0.143 4.143 4 N -0.256 5.256 5 C -0.042 4.042 6 C 0.314 3.686 7 O -0.522 6.522 8 N -0.237 5.237 9 C 0.119 3.881 10 C -0.587 4.587 11 H 0.042 0.958 12 C -0.181 4.181 13 N -0.578 5.578 14 Si 0.772 3.228 15 H -0.166 1.166 16 H -0.202 1.202 17 H -0.180 1.180 18 H 0.111 0.889 19 H 0.128 0.872 20 H 0.070 0.930 21 H 0.248 0.752 22 H 0.088 0.912 23 H 0.144 0.856 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.876 13.025 9.060 15.977 hybrid contribution 0.273 -1.038 -0.218 1.095 sum -1.603 11.987 8.842 14.981 Atomic orbital electron populations 1.20359 0.84933 1.04164 1.03846 1.21088 0.96344 0.84283 1.08759 1.22168 0.79933 1.00382 1.11781 1.45403 1.08969 1.04977 1.66276 1.21935 0.84492 0.94228 1.03554 1.16697 0.83911 0.83584 0.84387 1.90883 1.37118 1.60179 1.64045 1.45618 1.05957 1.08196 1.63927 1.19444 0.95957 0.76220 0.96466 1.21347 1.47074 0.98771 0.91495 0.95838 1.25863 0.93918 0.99292 0.99073 1.70041 1.47296 1.19033 1.21406 0.85677 0.80587 0.77707 0.78846 1.16577 1.20230 1.17966 0.88918 0.87161 0.93031 0.75151 0.91199 0.85557 0.91531 0.95661 0.91484 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 9.94 71.24 0.71 -1.26 15 2 C 0.00 0.01 6.91 40.30 0.28 0.29 15 3 C -0.02 -0.58 11.39 82.43 0.94 0.36 15 4 N -0.54 -18.65 3.18 -679.75 -2.16 -20.81 15 5 C 0.10 2.34 11.07 127.77 1.41 3.75 15 6 C 0.61 29.71 8.52 179.07 1.53 31.24 15 7 O -0.64 -36.77 17.64 -4.66 -0.08 -36.85 15 8 N -0.52 -24.39 2.76 -645.78 -1.78 -26.17 15 9 C 0.24 12.36 4.52 85.63 0.39 12.74 15 10 C -0.55 -33.43 9.94 25.60 0.25 -33.18 15 11 H 0.02 1.63 8.06 -2.91 -0.02 1.60 15 12 C 0.02 1.05 5.47 84.65 0.46 1.52 15 13 N -0.94 -59.47 13.96 21.45 0.30 -59.17 15 14 Si 0.95 43.74 27.47 68.60 1.88 45.62 15 15 H -0.24 -9.97 7.11 99.48 0.71 -9.27 15 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 17 H -0.26 -11.38 6.54 99.48 0.65 -10.73 15 18 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 19 H 0.11 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.05 1.68 7.83 -2.39 -0.02 1.66 15 21 H 0.23 3.43 8.06 -2.91 -0.02 3.40 15 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 15 23 H 0.13 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.07 1.76 8.07 -2.39 -0.02 1.74 15 25 H 0.03 1.39 7.13 -2.39 -0.02 1.37 15 26 H 0.07 3.02 7.20 -2.38 -0.02 3.00 15 27 H 0.27 15.88 8.31 -92.70 -0.77 15.11 15 Total: -1.00 -83.90 240.74 5.23 -78.67 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.10 Total: 3.25 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.97 Total: 15.46 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -3.64 Total: -106.15 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.08 Total: -36.85 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -83.90 5.23 -78.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261185653.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.423 kcal (2) G-P(sol) polarization free energy of solvation -83.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds