Wall clock time and date at job start Mon Mar 30 2020 02:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34419 * 126.53919 * 2 1 4 4 N 1.34362 * 108.26341 * 179.97438 * 3 2 1 5 5 C 1.31010 * 109.30150 * 359.97438 * 4 3 2 6 6 O 1.35509 * 125.76319 * 180.02562 * 5 4 3 7 7 N 1.35879 * 108.47327 * 359.75369 * 5 4 3 8 8 C 1.46501 * 126.47872 * 180.24480 * 7 5 4 9 9 C 1.53002 * 109.47053 * 270.17198 * 8 7 5 10 10 C 1.50701 * 109.46895 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00382 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99788 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00060 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00066 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47022 * 60.00111 * 14 12 10 16 16 H 1.48497 * 109.47500 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47027 * 300.00242 * 14 12 10 18 18 H 1.09002 * 109.47152 * 90.02632 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.02733 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.02713 * 1 2 3 21 21 H 1.07996 * 125.86709 * 0.02562 * 3 2 1 22 22 H 0.96696 * 113.99933 * 90.02585 * 6 5 4 23 23 H 1.08992 * 109.47244 * 30.17367 * 8 7 5 24 24 H 1.09000 * 109.47036 * 150.17390 * 8 7 5 25 25 H 1.08992 * 109.47233 * 300.00175 * 9 8 7 26 26 H 1.09000 * 109.47043 * 60.00196 * 9 8 7 27 27 H 0.97008 * 120.00084 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3073 1.0800 0.0000 4 7 3.5832 0.6586 0.0006 5 6 3.6066 -0.6512 0.0015 6 8 4.7202 -1.4234 0.0027 7 7 2.3258 -1.1048 0.0071 8 6 1.8980 -2.5059 0.0149 9 6 1.7493 -3.0019 -1.4249 10 6 1.3099 -4.4433 -1.4167 11 1 1.1519 -4.9545 -0.4786 12 6 1.1084 -5.1093 -2.6071 13 7 1.3003 -4.4867 -3.7495 14 14 0.5630 -6.8959 -2.5971 15 1 -0.7411 -7.0114 -1.8962 16 1 0.4176 -7.3770 -3.9944 17 1 1.5782 -7.7195 -1.8925 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 0.8902 0.5134 20 1 -0.3633 -0.8898 0.5143 21 1 1.9809 2.1094 0.0004 22 1 5.0426 -1.6472 0.8865 23 1 2.6429 -3.1104 0.5323 24 1 0.9405 -2.5906 0.5290 25 1 1.0044 -2.3974 -1.9423 26 1 2.7068 -2.9172 -1.9389 27 1 1.1582 -4.9552 -4.5870 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261212475.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:24 Heat of formation + Delta-G solvation = -17.510409 kcal Electronic energy + Delta-G solvation = -12185.611860 eV Core-core repulsion = 9943.555629 eV Total energy + Delta-G solvation = -2242.056231 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.00036 -38.26422 -36.47261 -34.58815 -32.46798 -31.13822 -27.00889 -26.84884 -23.66067 -22.48577 -21.02681 -19.51499 -18.48769 -17.35985 -16.67880 -16.41613 -15.53485 -15.14069 -14.60772 -14.47292 -14.20248 -13.70702 -13.45267 -13.05580 -12.88541 -12.73241 -12.63493 -12.10409 -12.01048 -11.49448 -10.95713 -10.64043 -10.47081 -9.11383 -8.27399 -6.42233 0.94699 1.40487 1.43943 1.51838 1.62033 2.00716 2.38013 3.01477 3.07278 3.85936 3.91019 4.28731 4.32383 4.51321 4.62939 4.79330 4.83727 5.07718 5.27526 5.32142 5.52176 5.65014 5.72326 5.88825 6.06326 6.72430 6.79314 6.98883 7.29247 8.84836 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049809 B = 0.009132 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.007690 B = 3065.501431 C = 3335.078305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.037 4.037 4 N -0.519 5.519 5 C 0.347 3.653 6 O -0.453 6.453 7 N -0.456 5.456 8 C 0.119 3.881 9 C 0.026 3.974 10 C -0.545 4.545 11 H 0.076 0.924 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.260 1.260 16 H -0.287 1.287 17 H -0.265 1.265 18 H 0.067 0.933 19 H 0.115 0.885 20 H 0.068 0.932 21 H 0.203 0.797 22 H 0.415 0.585 23 H 0.092 0.908 24 H 0.103 0.897 25 H -0.006 1.006 26 H -0.019 1.019 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 5.201 10.034 11.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 C -0.185 4.185 4 N -0.249 5.249 5 C 0.048 3.952 6 O -0.255 6.255 7 N -0.150 5.150 8 C -0.002 4.002 9 C -0.012 4.012 10 C -0.583 4.583 11 H 0.094 0.906 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.797 3.203 15 H -0.185 1.185 16 H -0.213 1.213 17 H -0.189 1.189 18 H 0.086 0.914 19 H 0.134 0.866 20 H 0.087 0.913 21 H 0.220 0.780 22 H 0.274 0.726 23 H 0.111 0.889 24 H 0.122 0.878 25 H 0.013 0.987 26 H 0.000 1.000 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.193 5.483 9.269 10.835 hybrid contribution -0.431 -1.496 -0.137 1.563 sum -1.624 3.988 9.132 10.096 Atomic orbital electron populations 1.20351 0.84700 1.04782 1.03168 1.21838 0.96106 0.85840 1.09701 1.22418 0.86709 0.99919 1.09409 1.70362 1.24408 1.07075 1.23051 1.20459 0.80145 0.86703 1.07921 1.84888 1.36974 1.68195 1.35484 1.46420 1.06539 1.08638 1.53383 1.22034 1.01889 0.76565 0.99758 1.19167 0.94941 0.96013 0.91032 1.21440 1.46680 0.96705 0.93496 0.90582 1.26052 0.95064 1.03625 0.94966 1.70129 1.49675 1.39266 0.98277 0.85368 0.79426 0.78266 0.77202 1.18469 1.21280 1.18945 0.91379 0.86647 0.91291 0.78021 0.72605 0.88944 0.87838 0.98728 1.00036 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.81 10.18 71.24 0.73 -1.08 15 2 C -0.02 -0.66 6.96 40.80 0.28 -0.38 15 3 C -0.04 -1.22 11.77 83.43 0.98 -0.24 15 4 N -0.52 -20.14 11.28 -314.08 -3.54 -23.69 15 5 C 0.35 13.60 9.07 179.85 1.63 15.23 15 6 O -0.45 -16.01 13.57 -88.12 -1.20 -17.21 15 7 N -0.46 -17.35 2.79 -625.47 -1.75 -19.10 15 8 C 0.12 4.65 5.89 86.38 0.51 5.16 15 9 C 0.03 1.37 5.30 29.85 0.16 1.52 15 10 C -0.55 -29.42 9.11 25.60 0.23 -29.19 15 11 H 0.08 3.75 7.74 -2.91 -0.02 3.73 15 12 C 0.00 0.08 5.46 84.65 0.46 0.55 15 13 N -0.93 -56.66 13.29 21.45 0.28 -56.37 15 14 Si 0.97 42.50 29.54 68.60 2.03 44.52 15 15 H -0.26 -10.66 7.11 99.48 0.71 -9.95 15 16 H -0.29 -12.50 7.11 99.48 0.71 -11.79 15 17 H -0.26 -11.03 7.11 99.48 0.71 -10.33 15 18 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 19 H 0.12 1.98 8.14 -2.39 -0.02 1.96 15 20 H 0.07 1.69 7.24 -2.38 -0.02 1.67 15 21 H 0.20 4.90 8.06 -2.91 -0.02 4.88 15 22 H 0.42 9.30 9.06 -74.06 -0.67 8.63 15 23 H 0.09 3.36 8.14 -2.39 -0.02 3.34 15 24 H 0.10 3.58 7.21 -2.39 -0.02 3.56 15 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 15 26 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 15 27 H 0.27 15.15 8.31 -92.70 -0.77 14.38 15 Total: -1.00 -71.21 243.85 1.31 -69.89 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.50 Total: 10.37 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.98 Total: -8.43 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -5.00 Total: -99.16 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.20 Total: -17.21 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.21 1.31 -69.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261212475.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.383 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds