Wall clock time and date at job start Mon Mar 30 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34412 * 126.54282 * 2 1 4 4 N 1.34359 * 108.26573 * 179.97438 * 3 2 1 5 5 C 1.31012 * 109.30199 * 0.02562 * 4 3 2 6 6 O 1.35502 * 125.76593 * 179.97438 * 5 4 3 7 7 N 1.35882 * 108.47237 * 0.22615 * 5 4 3 8 8 C 1.46498 * 126.48029 * 179.74558 * 7 5 4 9 9 H 1.09003 * 109.47172 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47008 * 300.02221 * 8 7 5 11 11 C 1.50703 * 109.47131 * 60.02262 * 8 7 5 12 12 H 1.07999 * 120.00372 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99712 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99750 * 179.97438 * 13 11 8 15 15 Si 1.86803 * 120.00227 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47113 * 89.99797 * 15 13 11 17 17 H 1.48503 * 109.47031 * 209.99918 * 15 13 11 18 18 H 1.48503 * 109.46989 * 329.99626 * 15 13 11 19 19 H 1.09001 * 109.47340 * 89.97387 * 1 2 3 20 20 H 1.09003 * 109.47670 * 209.97975 * 1 2 3 21 21 H 1.09007 * 109.47022 * 329.98100 * 1 2 3 22 22 H 1.08006 * 125.86917 * 0.02562 * 3 2 1 23 23 H 0.96700 * 114.00407 * 90.01954 * 6 5 4 24 24 H 1.09002 * 109.46876 * 180.02562 * 10 8 7 25 25 H 1.08998 * 109.47061 * 299.99876 * 10 8 7 26 26 H 1.09003 * 109.47159 * 59.99986 * 10 8 7 27 27 H 0.97002 * 120.00021 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3073 1.0799 0.0000 4 7 3.5831 0.6585 0.0006 5 6 3.6066 -0.6514 0.0004 6 8 4.7200 -1.4236 0.0003 7 7 2.3257 -1.1049 -0.0054 8 6 1.8978 -2.5060 -0.0129 9 1 0.8088 -2.5533 -0.0168 10 6 2.4428 -3.1990 -1.2633 11 6 2.4264 -3.1992 1.2164 12 1 3.0219 -2.6511 1.9315 13 6 2.1498 -4.5332 1.4281 14 7 2.6115 -5.1383 2.5006 15 14 1.1204 -5.4815 0.1910 16 1 2.0096 -6.0844 -0.8342 17 1 0.3715 -6.5563 0.8905 18 1 0.1616 -4.5577 -0.4668 19 1 -0.3634 0.0005 -1.0277 20 1 -0.3634 -0.8902 0.5135 21 1 -0.3633 0.8899 0.5142 22 1 1.9810 2.1094 0.0004 23 1 5.0431 -1.6481 0.8837 24 1 2.1241 -4.2414 -1.2690 25 1 2.0605 -2.6976 -2.1524 26 1 3.5318 -3.1517 -1.2595 27 1 2.4172 -6.0770 2.6494 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261230059.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:40 Heat of formation + Delta-G solvation = 20.650181 kcal Electronic energy + Delta-G solvation = -12718.465918 eV Core-core repulsion = 10478.064454 eV Total energy + Delta-G solvation = -2240.401464 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.32152 -36.43845 -35.10070 -32.30918 -31.10175 -29.31573 -25.42624 -25.39728 -22.35439 -20.64263 -19.33424 -17.65815 -16.55151 -15.72524 -15.26924 -14.35360 -13.78320 -13.55335 -13.05856 -12.87031 -12.52224 -12.28653 -12.17877 -11.66191 -11.44849 -11.00020 -10.96830 -10.41016 -9.85772 -9.73692 -9.21186 -8.91183 -8.64354 -7.49383 -6.39729 -4.44965 2.62717 3.05856 3.12630 3.18276 3.40073 3.66845 4.09846 4.73176 4.90275 5.35140 5.58537 5.81374 5.88927 5.92327 6.10532 6.13410 6.18462 6.38454 6.45208 6.81444 7.08963 7.18577 7.40565 7.53988 8.09106 8.46103 8.59880 8.70479 9.16729 10.72184 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.041796 B = 0.014160 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.751925 B = 1976.929835 C = 2239.005733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.025 4.025 3 C -0.034 4.034 4 N -0.509 5.509 5 C 0.386 3.614 6 O -0.443 6.443 7 N -0.424 5.424 8 C 0.226 3.774 9 H 0.056 0.944 10 C -0.164 4.164 11 C -0.538 4.538 12 H 0.079 0.921 13 C 0.083 3.917 14 N -0.883 5.883 15 Si 0.886 3.114 16 H -0.273 1.273 17 H -0.290 1.290 18 H -0.266 1.266 19 H 0.064 0.936 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.164 0.836 23 H 0.399 0.601 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 5.189 -4.770 8.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 C -0.183 4.183 4 N -0.239 5.239 5 C 0.086 3.914 6 O -0.244 6.244 7 N -0.115 5.115 8 C 0.125 3.875 9 H 0.074 0.926 10 C -0.221 4.221 11 C -0.576 4.576 12 H 0.097 0.903 13 C -0.122 4.122 14 N -0.519 5.519 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.217 1.217 18 H -0.191 1.191 19 H 0.083 0.917 20 H 0.086 0.914 21 H 0.096 0.904 22 H 0.181 0.819 23 H 0.256 0.744 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.211 5.281 -5.262 8.117 hybrid contribution -1.030 -1.389 -0.011 1.730 sum -4.242 3.892 -5.273 7.807 Atomic orbital electron populations 1.20169 0.87865 1.03157 1.01971 1.21029 0.94256 0.86859 1.12076 1.21690 0.87889 0.97972 1.10736 1.70360 1.22705 1.07308 1.23494 1.20088 0.79901 0.85840 1.05611 1.84741 1.37225 1.68322 1.34103 1.46301 1.05999 1.08061 1.51117 1.19645 0.96659 0.75061 0.96175 0.92584 1.22480 1.03166 0.99674 0.96817 1.20904 1.35912 0.95744 1.05014 0.90271 1.24826 0.95031 0.97020 0.95367 1.69844 1.43993 1.11769 1.26248 0.86881 0.80657 0.80036 0.80909 1.19915 1.21676 1.19142 0.91690 0.91369 0.90448 0.81852 0.74447 0.92555 0.94537 0.90904 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.01 36.01 0.36 -0.72 15 2 C -0.03 -0.48 6.96 -81.39 -0.57 -1.05 15 3 C -0.03 -0.64 11.77 -17.80 -0.21 -0.85 15 4 N -0.51 -11.03 11.28 -14.72 -0.17 -11.19 15 5 C 0.39 8.57 8.36 -89.18 -0.75 7.82 15 6 O -0.44 -9.24 12.28 -18.20 -0.22 -9.46 15 7 N -0.42 -9.27 2.64 -108.10 -0.29 -9.56 15 8 C 0.23 5.18 2.49 -69.08 -0.17 5.01 15 9 H 0.06 1.26 5.92 -51.93 -0.31 0.96 15 10 C -0.16 -3.52 8.72 37.16 0.32 -3.20 15 11 C -0.54 -14.13 8.91 -34.44 -0.31 -14.44 15 12 H 0.08 2.28 7.99 -52.49 -0.42 1.86 15 13 C 0.08 2.21 5.45 -17.82 -0.10 2.11 15 14 N -0.88 -25.15 13.96 55.43 0.77 -24.37 15 15 Si 0.89 20.19 24.37 -169.99 -4.14 16.04 15 16 H -0.27 -6.08 6.87 56.52 0.39 -5.70 15 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 18 H -0.27 -5.74 6.53 56.52 0.37 -5.37 15 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.07 1.06 7.25 -51.93 -0.38 0.68 15 21 H 0.08 0.92 8.14 -51.92 -0.42 0.50 15 22 H 0.16 2.45 8.06 -52.48 -0.42 2.02 15 23 H 0.40 7.09 9.06 45.56 0.41 7.50 15 24 H 0.06 1.21 3.27 -51.93 -0.17 1.04 15 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.07 1.61 6.99 -51.93 -0.36 1.24 15 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 228.97 15.07 3.45 3.45 Total: -1.00 -30.19 228.97 -4.10 -34.30 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -2.09 Total: 6.11 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.41 Total: -5.32 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.32 Total: -45.12 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.22 Total: -9.46 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.14 Total: 16.04 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -30.19 -4.10 -34.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230059.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.947 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds