Wall clock time and date at job start Mon Mar 30 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34412 * 126.54282 * 2 1 4 4 N 1.34359 * 108.26573 * 179.97438 * 3 2 1 5 5 C 1.31012 * 109.30199 * 0.02562 * 4 3 2 6 6 O 1.35502 * 125.76593 * 179.97438 * 5 4 3 7 7 N 1.35882 * 108.47237 * 0.22615 * 5 4 3 8 8 C 1.46498 * 126.48029 * 179.74558 * 7 5 4 9 9 H 1.09003 * 109.47172 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47008 * 300.02221 * 8 7 5 11 11 C 1.50703 * 109.47131 * 60.02262 * 8 7 5 12 12 H 1.07999 * 120.00372 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99712 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99750 * 179.97438 * 13 11 8 15 15 Si 1.86803 * 120.00227 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47113 * 89.99797 * 15 13 11 17 17 H 1.48503 * 109.47031 * 209.99918 * 15 13 11 18 18 H 1.48503 * 109.46989 * 329.99626 * 15 13 11 19 19 H 1.09001 * 109.47340 * 89.97387 * 1 2 3 20 20 H 1.09003 * 109.47670 * 209.97975 * 1 2 3 21 21 H 1.09007 * 109.47022 * 329.98100 * 1 2 3 22 22 H 1.08006 * 125.86917 * 0.02562 * 3 2 1 23 23 H 0.96700 * 114.00407 * 90.01954 * 6 5 4 24 24 H 1.09002 * 109.46876 * 180.02562 * 10 8 7 25 25 H 1.08998 * 109.47061 * 299.99876 * 10 8 7 26 26 H 1.09003 * 109.47159 * 59.99986 * 10 8 7 27 27 H 0.97002 * 120.00021 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3073 1.0799 0.0000 4 7 3.5831 0.6585 0.0006 5 6 3.6066 -0.6514 0.0004 6 8 4.7200 -1.4236 0.0003 7 7 2.3257 -1.1049 -0.0054 8 6 1.8978 -2.5060 -0.0129 9 1 0.8088 -2.5533 -0.0168 10 6 2.4428 -3.1990 -1.2633 11 6 2.4264 -3.1992 1.2164 12 1 3.0219 -2.6511 1.9315 13 6 2.1498 -4.5332 1.4281 14 7 2.6115 -5.1383 2.5006 15 14 1.1204 -5.4815 0.1910 16 1 2.0096 -6.0844 -0.8342 17 1 0.3715 -6.5563 0.8905 18 1 0.1616 -4.5577 -0.4668 19 1 -0.3634 0.0005 -1.0277 20 1 -0.3634 -0.8902 0.5135 21 1 -0.3633 0.8899 0.5142 22 1 1.9810 2.1094 0.0004 23 1 5.0431 -1.6481 0.8837 24 1 2.1241 -4.2414 -1.2690 25 1 2.0605 -2.6976 -2.1524 26 1 3.5318 -3.1517 -1.2595 27 1 2.4172 -6.0770 2.6494 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261230059.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:39 Heat of formation + Delta-G solvation = -3.361700 kcal Electronic energy + Delta-G solvation = -12719.507151 eV Core-core repulsion = 10478.064454 eV Total energy + Delta-G solvation = -2241.442697 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.89819 -38.04663 -36.89191 -34.23966 -32.52669 -30.97280 -27.35565 -26.80161 -24.12727 -22.22989 -20.91627 -19.48930 -18.40157 -17.42231 -16.93569 -16.08860 -15.33930 -15.05621 -14.88947 -14.34984 -14.21937 -13.75860 -13.56968 -13.18284 -13.02462 -12.76129 -12.65738 -12.15211 -11.63699 -11.58537 -10.93011 -10.81563 -10.36435 -8.99607 -8.44400 -6.54937 1.05234 1.27915 1.30871 1.41638 1.84144 2.10852 2.19979 2.89263 3.16723 3.93728 4.11271 4.29591 4.39721 4.47666 4.53282 4.67470 4.82022 4.92105 5.11536 5.20032 5.28520 5.58352 5.80350 5.91533 6.14373 6.45189 6.86806 7.11656 7.13086 8.71106 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.041796 B = 0.014160 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.751925 B = 1976.929835 C = 2239.005733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.029 4.029 3 C -0.040 4.040 4 N -0.526 5.526 5 C 0.356 3.644 6 O -0.451 6.451 7 N -0.436 5.436 8 C 0.230 3.770 9 H 0.069 0.931 10 C -0.159 4.159 11 C -0.539 4.539 12 H 0.037 0.963 13 C 0.030 3.970 14 N -0.931 5.931 15 Si 0.944 3.056 16 H -0.263 1.263 17 H -0.290 1.290 18 H -0.239 1.239 19 H 0.088 0.912 20 H 0.057 0.943 21 H 0.109 0.891 22 H 0.202 0.798 23 H 0.405 0.595 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 5.845 -6.379 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C -0.188 4.188 4 N -0.257 5.257 5 C 0.057 3.943 6 O -0.253 6.253 7 N -0.129 5.129 8 C 0.128 3.872 9 H 0.086 0.914 10 C -0.216 4.216 11 C -0.577 4.577 12 H 0.055 0.945 13 C -0.170 4.170 14 N -0.569 5.569 15 Si 0.769 3.231 16 H -0.189 1.189 17 H -0.217 1.217 18 H -0.163 1.163 19 H 0.106 0.894 20 H 0.076 0.924 21 H 0.127 0.873 22 H 0.219 0.781 23 H 0.263 0.737 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.155 5.973 -6.879 10.468 hybrid contribution -0.384 -1.477 0.565 1.627 sum -5.539 4.496 -6.315 9.527 Atomic orbital electron populations 1.20360 0.84577 1.04233 1.03803 1.21892 0.96281 0.85915 1.10442 1.22375 0.86750 0.99776 1.09856 1.70356 1.24541 1.07112 1.23679 1.20361 0.80314 0.86314 1.07342 1.84693 1.37347 1.68398 1.34848 1.46362 1.06394 1.08250 1.51861 1.19491 0.96983 0.75697 0.95035 0.91382 1.22386 1.02370 0.99860 0.97021 1.21023 1.35104 0.95901 1.05645 0.94484 1.25675 0.96234 0.97970 0.97171 1.69984 1.46009 1.12303 1.28588 0.85931 0.79575 0.78910 0.78670 1.18882 1.21748 1.16260 0.89353 0.92368 0.87280 0.78073 0.73729 0.92319 0.92112 0.92255 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.84 10.01 71.24 0.71 -1.12 15 2 C -0.03 -1.05 6.96 40.79 0.28 -0.77 15 3 C -0.04 -1.40 11.77 83.43 0.98 -0.42 15 4 N -0.53 -22.36 11.28 -314.08 -3.54 -25.90 15 5 C 0.36 15.80 8.36 179.84 1.50 17.30 15 6 O -0.45 -19.29 12.28 -88.04 -1.08 -20.37 15 7 N -0.44 -18.61 2.64 -606.98 -1.60 -20.22 15 8 C 0.23 10.22 2.49 44.25 0.11 10.33 15 9 H 0.07 2.87 5.92 -2.39 -0.01 2.86 15 10 C -0.16 -6.49 8.72 71.98 0.63 -5.87 15 11 C -0.54 -28.63 8.91 25.60 0.23 -28.41 15 12 H 0.04 2.23 7.99 -2.91 -0.02 2.20 15 13 C 0.03 1.61 5.45 84.65 0.46 2.07 15 14 N -0.93 -54.22 13.96 21.45 0.30 -53.92 15 15 Si 0.94 40.28 24.37 68.60 1.67 41.95 15 16 H -0.26 -10.79 6.87 99.48 0.68 -10.10 15 17 H -0.29 -12.37 7.11 99.48 0.71 -11.66 15 18 H -0.24 -9.11 6.53 99.48 0.65 -8.46 15 19 H 0.09 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.06 1.61 7.25 -2.39 -0.02 1.60 15 21 H 0.11 2.08 8.14 -2.38 -0.02 2.06 15 22 H 0.20 5.26 8.06 -2.91 -0.02 5.24 15 23 H 0.41 15.26 9.06 -74.06 -0.67 14.59 15 24 H 0.06 2.35 3.27 -2.39 -0.01 2.34 15 25 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 26 H 0.06 2.56 6.99 -2.39 -0.02 2.55 15 27 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 Total: -1.00 -65.16 228.97 1.09 -64.07 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.44 Total: 21.27 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.91 Total: -6.88 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.85 Total: -100.04 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.08 Total: -20.37 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.67 Total: 41.95 kcal Total: -65.16 1.09 -64.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230059.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.707 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds