Wall clock time and date at job start Mon Mar 30 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35502 * 117.00076 * 2 1 4 4 N 1.31020 * 125.76508 * 0.04323 * 3 2 1 5 5 C 1.34359 * 109.30021 * 179.73747 * 4 3 2 6 6 C 1.34413 * 108.26780 * 0.37340 * 5 4 3 7 7 C 1.50700 * 126.54333 * 179.89586 * 6 5 4 8 8 C 1.50702 * 109.46869 * 84.68868 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 N 1.35883 * 125.76427 * 180.02562 * 3 2 1 17 17 C 1.46496 * 126.47773 * 0.02562 * 16 3 2 18 18 H 1.08998 * 109.47167 * 59.99760 * 1 2 3 19 19 H 1.09002 * 109.47569 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46647 * 300.00097 * 1 2 3 21 21 H 1.08004 * 125.86630 * 180.27409 * 5 4 3 22 22 H 1.09004 * 109.47210 * 324.69162 * 7 6 5 23 23 H 1.08994 * 109.47551 * 204.68814 * 7 6 5 24 24 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 25 25 H 1.09006 * 109.46935 * 270.02803 * 17 16 3 26 26 H 1.09002 * 109.47318 * 30.01970 * 17 16 3 27 27 H 1.08996 * 109.47298 * 150.02832 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.4446 2.3723 0.0008 5 6 2.3689 3.3474 0.0063 6 6 3.5851 2.7752 0.0007 7 6 4.9125 3.4887 0.0017 8 6 5.2956 3.8349 1.4175 9 1 4.6434 3.5649 2.2349 10 6 6.4818 4.4909 1.6700 11 7 7.2762 4.8194 0.6747 12 14 6.9603 4.9132 3.4255 13 1 5.9037 4.4382 4.3545 14 1 8.2471 4.2519 3.7605 15 1 7.1109 6.3846 3.5573 16 7 3.3871 1.4144 -0.0005 17 6 4.4274 0.3828 -0.0016 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 2.1689 4.4088 0.0124 22 1 4.8342 4.4026 -0.5873 23 1 5.6737 2.8407 -0.4325 24 1 8.1106 5.2812 0.8522 25 1 4.6855 0.1260 1.0258 26 1 4.0586 -0.5045 -0.5162 27 1 5.3119 0.7594 -0.5152 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261247040.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:44 Heat of formation + Delta-G solvation = 22.489218 kcal Electronic energy + Delta-G solvation = -12184.280012 eV Core-core repulsion = 9943.958295 eV Total energy + Delta-G solvation = -2240.321717 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.29591 -37.80336 -33.53452 -33.12488 -30.31476 -27.45899 -26.51056 -25.69266 -23.01189 -20.54113 -19.29254 -17.36709 -16.49351 -15.89583 -15.56722 -14.72373 -14.22002 -13.99992 -13.06376 -12.50024 -12.42376 -12.16916 -11.86083 -11.73497 -11.36224 -10.88965 -10.75391 -10.63180 -10.00992 -9.47818 -9.23809 -8.88714 -8.48387 -7.08609 -6.09166 -4.14269 2.66834 2.89144 3.26761 3.34944 3.40684 3.85707 4.16178 4.41301 5.24712 5.27795 5.36456 5.44093 5.45453 5.68301 5.74549 5.93753 6.19059 6.50503 6.58809 7.05493 7.36938 7.60945 7.65078 7.85711 8.10793 8.24612 8.72721 8.90371 9.50384 10.99211 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.059006 B = 0.008759 C = 0.008667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.411826 B = 3195.907314 C = 3229.694703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.309 6.309 3 C 0.354 3.646 4 N -0.529 5.529 5 C -0.044 4.044 6 C 0.038 3.962 7 C 0.087 3.913 8 C -0.513 4.513 9 H 0.058 0.942 10 C 0.060 3.940 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.282 1.282 16 N -0.454 5.454 17 C 0.084 3.916 18 H 0.056 0.944 19 H 0.094 0.906 20 H 0.056 0.944 21 H 0.167 0.833 22 H 0.047 0.953 23 H 0.026 0.974 24 H 0.262 0.738 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -8.110 -1.508 10.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.214 6.214 3 C 0.055 3.945 4 N -0.264 5.264 5 C -0.187 4.187 6 C -0.074 4.074 7 C 0.049 3.951 8 C -0.551 4.551 9 H 0.076 0.924 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.208 1.208 16 N -0.148 5.148 17 C -0.059 4.059 18 H 0.075 0.925 19 H 0.112 0.888 20 H 0.075 0.925 21 H 0.185 0.815 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.703 -8.294 -1.551 11.425 hybrid contribution 1.029 0.148 0.998 1.441 sum -6.674 -8.146 -0.553 10.545 Atomic orbital electron populations 1.22766 0.76182 1.02364 1.02457 1.85738 1.22689 1.21966 1.91058 1.20291 0.81277 0.86230 1.06716 1.70333 1.33142 0.96705 1.26197 1.21609 0.87577 0.97999 1.11502 1.22233 1.00425 0.79683 1.05052 1.17868 0.84651 0.94378 0.98213 1.21106 1.04640 1.37506 0.91876 0.92376 1.24991 0.96244 0.95596 0.97361 1.69956 1.11964 1.40521 1.30831 0.86457 0.78343 0.78213 0.84585 1.19690 1.20990 1.20801 1.44812 1.04061 1.07503 1.58425 1.21866 0.90839 0.89793 1.03381 0.92527 0.88765 0.92494 0.81529 0.93544 0.95543 0.92784 0.90981 0.90593 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 10.67 101.05 1.08 1.82 15 2 O -0.31 -5.30 10.49 -18.20 -0.19 -5.49 15 3 C 0.35 7.22 8.51 -89.17 -0.76 6.46 15 4 N -0.53 -11.39 10.64 -14.72 -0.16 -11.55 15 5 C -0.04 -0.98 11.77 -17.80 -0.21 -1.18 15 6 C 0.04 0.87 6.15 -81.39 -0.50 0.36 15 7 C 0.09 2.20 5.31 -29.03 -0.15 2.04 15 8 C -0.51 -14.12 9.09 -34.44 -0.31 -14.44 15 9 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 11 N -0.89 -25.64 13.29 55.43 0.74 -24.90 15 12 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 15 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 16 N -0.45 -9.40 3.19 -121.32 -0.39 -9.79 15 17 C 0.08 1.39 10.98 59.84 0.66 2.05 15 18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.09 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.17 3.41 8.06 -52.48 -0.42 2.99 15 22 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 23 H 0.03 0.68 7.11 -51.93 -0.37 0.31 15 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.09 1.47 7.14 -51.93 -0.37 1.10 15 LS Contribution 243.62 15.07 3.67 3.67 Total: -1.00 -31.17 243.62 -4.89 -36.06 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -3.24 Total: -2.90 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.30 Total: -1.33 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.19 Total: -46.24 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.19 Total: -5.49 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.17 -4.89 -36.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247040.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.549 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds