Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35502 * 117.00076 * 2 1 4 4 N 1.31020 * 125.76508 * 0.04323 * 3 2 1 5 5 C 1.34359 * 109.30021 * 179.73747 * 4 3 2 6 6 C 1.34413 * 108.26780 * 0.37340 * 5 4 3 7 7 C 1.50700 * 126.54333 * 179.89586 * 6 5 4 8 8 C 1.50702 * 109.46869 * 84.68868 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 N 1.35883 * 125.76427 * 180.02562 * 3 2 1 17 17 C 1.46496 * 126.47773 * 0.02562 * 16 3 2 18 18 H 1.08998 * 109.47167 * 59.99760 * 1 2 3 19 19 H 1.09002 * 109.47569 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46647 * 300.00097 * 1 2 3 21 21 H 1.08004 * 125.86630 * 180.27409 * 5 4 3 22 22 H 1.09004 * 109.47210 * 324.69162 * 7 6 5 23 23 H 1.08994 * 109.47551 * 204.68814 * 7 6 5 24 24 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 25 25 H 1.09006 * 109.46935 * 270.02803 * 17 16 3 26 26 H 1.09002 * 109.47318 * 30.01970 * 17 16 3 27 27 H 1.08996 * 109.47298 * 150.02832 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.4446 2.3723 0.0008 5 6 2.3689 3.3474 0.0063 6 6 3.5851 2.7752 0.0007 7 6 4.9125 3.4887 0.0017 8 6 5.2956 3.8349 1.4175 9 1 4.6434 3.5649 2.2349 10 6 6.4818 4.4909 1.6700 11 7 7.2762 4.8194 0.6747 12 14 6.9603 4.9132 3.4255 13 1 5.9037 4.4382 4.3545 14 1 8.2471 4.2519 3.7605 15 1 7.1109 6.3846 3.5573 16 7 3.3871 1.4144 -0.0005 17 6 4.4274 0.3828 -0.0016 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 2.1689 4.4088 0.0124 22 1 4.8342 4.4026 -0.5873 23 1 5.6737 2.8407 -0.4325 24 1 8.1106 5.2812 0.8522 25 1 4.6855 0.1260 1.0258 26 1 4.0586 -0.5045 -0.5162 27 1 5.3119 0.7594 -0.5152 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261247040.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = 0.903916 kcal Electronic energy + Delta-G solvation = -12185.216021 eV Core-core repulsion = 9943.958295 eV Total energy + Delta-G solvation = -2241.257726 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.91737 -39.16399 -35.46024 -34.82459 -32.22639 -28.75578 -28.14713 -27.22158 -24.99474 -22.06994 -20.97631 -18.85814 -18.54086 -17.41366 -17.02164 -16.61887 -15.61608 -15.49861 -14.54376 -14.38952 -14.14706 -13.67781 -13.47942 -13.28251 -12.80274 -12.70771 -12.60179 -12.05670 -11.95411 -11.48252 -10.96770 -10.59474 -10.48365 -8.80502 -8.17845 -6.33030 1.17279 1.26925 1.40724 1.43429 1.55429 2.15837 2.43226 2.77409 3.11257 3.80641 4.01444 4.38098 4.43792 4.44676 4.51090 4.62439 4.70898 4.82295 4.95510 5.29783 5.45086 5.71992 5.72447 5.90894 6.17088 6.58679 6.76274 7.07864 7.35836 8.88392 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.059006 B = 0.008759 C = 0.008667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.411826 B = 3195.907314 C = 3229.694703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.307 6.307 3 C 0.364 3.636 4 N -0.543 5.543 5 C -0.047 4.047 6 C 0.012 3.988 7 C 0.100 3.900 8 C -0.528 4.528 9 H 0.048 0.952 10 C 0.014 3.986 11 N -0.924 5.924 12 Si 0.963 3.037 13 H -0.271 1.271 14 H -0.275 1.275 15 H -0.276 1.276 16 N -0.460 5.460 17 C 0.079 3.921 18 H 0.056 0.944 19 H 0.139 0.861 20 H 0.053 0.947 21 H 0.175 0.825 22 H 0.027 0.973 23 H 0.015 0.985 24 H 0.267 0.733 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 -9.218 -0.775 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.213 6.213 3 C 0.064 3.936 4 N -0.279 5.279 5 C -0.190 4.190 6 C -0.100 4.100 7 C 0.062 3.938 8 C -0.566 4.566 9 H 0.066 0.934 10 C -0.185 4.185 11 N -0.564 5.564 12 Si 0.788 3.212 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.201 1.201 16 N -0.154 5.154 17 C -0.063 4.063 18 H 0.075 0.925 19 H 0.157 0.843 20 H 0.071 0.929 21 H 0.192 0.808 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.125 0.875 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.286 -9.430 -0.823 12.580 hybrid contribution 1.115 0.407 0.730 1.394 sum -7.171 -9.023 -0.094 11.526 Atomic orbital electron populations 1.23163 0.73757 1.05285 1.02286 1.85804 1.24938 1.19989 1.90584 1.20573 0.81320 0.87063 1.04613 1.70342 1.33080 0.97015 1.27419 1.21845 0.87644 0.98777 1.10773 1.21832 0.99489 0.81116 1.07584 1.17532 0.85754 0.93628 0.96865 1.21298 1.04841 1.37883 0.92571 0.93399 1.25777 0.96084 0.95277 1.01393 1.70050 1.12426 1.41028 1.32871 0.85432 0.78089 0.78141 0.79576 1.19581 1.20068 1.20131 1.44959 1.05096 1.07313 1.57993 1.22114 0.90083 0.89861 1.04199 0.92497 0.84300 0.92860 0.80758 0.95452 0.96698 0.92389 0.90427 0.87455 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.13 10.67 113.37 1.21 2.34 15 2 O -0.31 -9.76 10.49 -88.04 -0.92 -10.68 15 3 C 0.36 14.31 8.51 179.84 1.53 15.84 15 4 N -0.54 -22.89 10.64 -314.08 -3.34 -26.24 15 5 C -0.05 -2.09 11.77 83.43 0.98 -1.11 15 6 C 0.01 0.56 6.15 40.79 0.25 0.81 15 7 C 0.10 5.19 5.31 29.10 0.15 5.35 15 8 C -0.53 -29.35 9.09 25.60 0.23 -29.12 15 9 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 10 C 0.01 0.76 5.46 84.66 0.46 1.22 15 11 N -0.92 -53.26 13.29 21.45 0.28 -52.97 15 12 Si 0.96 43.33 29.54 68.60 2.03 45.36 15 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 14 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 15 H -0.28 -12.08 7.11 99.48 0.71 -11.38 15 16 N -0.46 -18.66 3.19 -648.80 -2.07 -20.73 15 17 C 0.08 2.51 10.98 127.77 1.40 3.91 15 18 H 0.06 1.31 8.14 -2.39 -0.02 1.29 15 19 H 0.14 1.92 8.14 -2.39 -0.02 1.90 15 20 H 0.05 1.26 8.14 -2.38 -0.02 1.25 15 21 H 0.18 7.20 8.06 -2.91 -0.02 7.18 15 22 H 0.03 1.49 8.14 -2.38 -0.02 1.47 15 23 H 0.01 0.79 7.11 -2.39 -0.02 0.77 15 24 H 0.27 14.42 8.31 -92.70 -0.77 13.65 15 25 H 0.08 2.37 8.14 -2.38 -0.02 2.35 15 26 H 0.11 2.70 8.14 -2.39 -0.02 2.68 15 27 H 0.09 2.79 7.14 -2.39 -0.02 2.77 15 Total: -1.00 -65.38 243.62 3.35 -62.03 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.15 Total: 4.02 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.23 Total: -0.78 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -5.13 Total: -99.94 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.92 Total: -10.68 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.38 3.35 -62.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247040.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.934 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds