Wall clock time and date at job start Mon Mar 30 2020 02:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 N 1.36652 * 110.99522 * 2 1 4 4 C 1.37097 * 123.48700 * 284.39603 * 3 2 1 5 5 H 1.07997 * 120.00218 * 161.35256 * 4 3 2 6 6 C 1.38949 * 119.99729 * 341.36556 * 4 3 2 7 7 N 1.31409 * 120.00176 * 337.30392 * 6 4 3 8 8 Si 1.86804 * 119.99870 * 157.31327 * 6 4 3 9 9 H 1.48497 * 109.47238 * 89.99691 * 8 6 4 10 10 H 1.48500 * 109.46701 * 209.99211 * 8 6 4 11 11 H 1.48495 * 109.46979 * 329.99186 * 8 6 4 12 12 C 1.34715 * 113.03113 * 104.66957 * 3 2 1 13 13 O 1.21282 * 126.01911 * 181.07753 * 12 3 2 14 14 C 1.52046 * 107.96931 * 0.97227 * 12 3 2 15 15 C 1.47009 * 110.99662 * 119.53798 * 2 1 3 16 16 C 1.51874 * 122.69588 * 120.06334 * 15 2 1 17 17 C 1.51860 * 122.71121 * 46.38957 * 15 2 1 18 18 H 1.09002 * 109.47321 * 59.87909 * 1 2 3 19 19 H 1.08999 * 109.46770 * 179.87687 * 1 2 3 20 20 H 1.08996 * 109.47471 * 299.87192 * 1 2 3 21 21 H 0.97008 * 119.99868 * 354.21638 * 7 6 4 22 22 H 1.08999 * 111.12999 * 256.05475 * 14 12 3 23 23 H 1.09004 * 110.80540 * 132.32223 * 14 12 3 24 24 H 1.09000 * 117.52857 * 355.36003 * 16 15 2 25 25 H 1.08997 * 117.52748 * 140.54598 * 16 15 2 26 26 H 1.09000 * 117.52485 * 219.42774 * 17 15 2 27 27 H 1.09001 * 117.53021 * 4.61828 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 7 1.9587 1.2758 0.0000 4 6 1.9643 2.0839 -1.1075 5 1 2.0744 3.1524 -0.9958 6 6 1.8281 1.5281 -2.3737 7 7 2.1354 0.2662 -2.5739 8 14 1.2082 2.5747 -3.7914 9 1 2.3602 3.2206 -4.4704 10 1 0.4811 1.7154 -4.7600 11 1 0.2908 3.6199 -3.2708 12 6 2.4406 1.6554 1.1994 13 8 2.9118 2.7402 1.4678 14 6 2.2875 0.4852 2.1581 15 6 1.9958 -0.6766 1.1941 16 6 2.8875 -1.9035 1.1155 17 6 1.4670 -2.0150 1.6793 18 1 -0.3634 0.5157 -0.8889 19 1 -0.3633 -1.0277 -0.0022 20 1 -0.3634 0.5118 0.8911 21 1 2.5359 -0.2546 -1.8602 22 1 1.4531 0.6435 2.8412 23 1 3.2124 0.3120 2.7084 24 1 3.0730 -2.3292 0.1294 25 1 3.7161 -1.9700 1.8206 26 1 1.3616 -2.1548 2.7552 27 1 0.7185 -2.5140 1.0639 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254210.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:20 Heat of formation + Delta-G solvation = 46.629484 kcal Electronic energy + Delta-G solvation = -12981.757103 eV Core-core repulsion = 10742.482187 eV Total energy + Delta-G solvation = -2239.274916 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.33035 -36.62749 -35.25031 -32.39248 -30.24204 -28.78638 -25.21233 -23.53739 -22.15310 -20.26327 -19.35549 -17.68972 -15.56503 -15.40202 -14.89069 -14.51951 -13.85023 -13.47497 -12.92552 -12.67932 -12.32039 -12.07672 -11.80607 -11.30405 -11.06453 -10.89260 -10.49501 -10.21224 -9.99036 -9.84088 -9.34768 -8.79932 -8.17692 -7.41871 -6.44948 -3.83271 3.31471 3.36896 3.55808 3.68632 3.81283 4.00014 4.36104 4.81987 4.94501 5.12806 5.24409 5.41199 5.68915 5.76553 5.86239 5.97441 6.05654 6.11129 6.14409 6.39838 6.48325 6.60448 7.25212 7.95296 8.22040 8.78521 8.94501 9.58067 9.92934 10.80427 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.015260 C = 0.012774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.734332 B = 1834.412559 C = 2191.509967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.257 5.257 3 N -0.289 5.289 4 C -0.413 4.413 5 H 0.097 0.903 6 C 0.021 3.979 7 N -0.848 5.848 8 Si 1.072 2.928 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.284 1.284 12 C 0.426 3.574 13 O -0.577 6.577 14 C -0.140 4.140 15 C 0.005 3.995 16 C -0.142 4.142 17 C -0.161 4.161 18 H 0.080 0.920 19 H 0.067 0.933 20 H 0.022 0.978 21 H 0.297 0.703 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 -5.979 4.651 8.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.072 5.072 3 N -0.096 5.096 4 C -0.539 4.539 5 H 0.115 0.885 6 C -0.192 4.192 7 N -0.481 5.481 8 Si 0.898 3.102 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.210 1.210 12 C 0.213 3.787 13 O -0.460 6.460 14 C -0.182 4.182 15 C -0.086 4.086 16 C -0.180 4.180 17 C -0.199 4.199 18 H 0.098 0.902 19 H 0.086 0.914 20 H 0.040 0.960 21 H 0.110 0.890 22 H 0.105 0.895 23 H 0.112 0.888 24 H 0.123 0.877 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.375 -5.713 2.632 7.138 hybrid contribution 0.041 0.268 2.359 2.375 sum -3.334 -5.445 4.991 8.104 Atomic orbital electron populations 1.22844 0.88463 1.01194 1.01346 1.64394 1.07031 1.01952 1.33802 1.43763 1.48884 1.07412 1.09556 1.20278 1.58653 0.90893 0.84028 0.88525 1.26234 0.96011 0.98272 0.98686 1.70431 1.31642 1.08733 1.37261 0.83486 0.76963 0.74860 0.74847 1.21043 1.20471 1.21025 1.20614 0.85100 0.89044 0.83974 1.90528 1.51506 1.24469 1.79490 1.22149 1.03277 0.94998 0.97749 1.21791 1.05355 0.89594 0.91826 1.22923 0.93141 0.99050 1.02915 1.22955 0.98159 0.97897 1.00922 0.90167 0.91389 0.95971 0.89015 0.89492 0.88839 0.87686 0.88467 0.88415 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.46 60.07 0.57 0.76 15 2 N -0.26 -5.94 3.06 -107.88 -0.33 -6.27 15 3 N -0.29 -7.79 2.60 -10.54 -0.03 -7.82 15 4 C -0.41 -11.94 9.33 -14.93 -0.14 -12.08 15 5 H 0.10 2.92 7.85 -52.49 -0.41 2.51 15 6 C 0.02 0.57 4.96 -17.47 -0.09 0.49 15 7 N -0.85 -23.98 13.17 55.50 0.73 -23.25 15 8 Si 1.07 23.90 29.98 -169.99 -5.10 18.80 15 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 12 C 0.43 11.29 8.11 -10.35 -0.08 11.21 15 13 O -0.58 -17.25 17.67 5.56 0.10 -17.15 15 14 C -0.14 -2.80 6.90 -26.82 -0.19 -2.98 15 15 C 0.00 0.09 2.32 -132.30 -0.31 -0.22 15 16 C -0.14 -2.25 10.43 -27.18 -0.28 -2.53 15 17 C -0.16 -2.28 9.78 -27.19 -0.27 -2.55 15 18 H 0.08 1.80 7.71 -51.93 -0.40 1.40 15 19 H 0.07 1.18 7.09 -51.93 -0.37 0.81 15 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.30 8.50 6.76 -40.82 -0.28 8.22 15 22 H 0.09 1.56 8.14 -51.93 -0.42 1.14 15 23 H 0.09 1.69 8.14 -51.93 -0.42 1.26 15 24 H 0.10 1.73 8.14 -51.93 -0.42 1.31 15 25 H 0.10 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 27 H 0.10 1.36 7.35 -51.93 -0.38 0.98 15 LS Contribution 234.69 15.07 3.54 3.54 Total: -1.00 -32.93 234.69 -5.04 -37.97 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.17 Total: 2.09 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.78 Total: -7.90 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.37 Total: -37.34 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.10 Total: -17.15 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.10 Total: 18.80 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.93 -5.04 -37.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254210.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.598 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds