Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 5 5 H 1.07994 * 120.00251 * 240.00374 * 4 2 1 6 6 C 1.37882 * 119.99770 * 60.00288 * 4 2 1 7 7 N 1.31514 * 119.99961 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46995 * 89.99984 * 8 6 4 10 10 H 1.48499 * 109.47028 * 210.00243 * 8 6 4 11 11 H 1.48497 * 109.47127 * 330.00255 * 8 6 4 12 12 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 13 13 C 1.50703 * 109.46912 * 294.99775 * 12 2 1 14 14 C 1.34417 * 126.54323 * 85.02678 * 13 12 2 15 15 N 1.34360 * 108.26566 * 179.97438 * 14 13 12 16 16 C 1.31016 * 109.30351 * 359.97438 * 15 14 13 17 17 O 1.35499 * 125.76554 * 179.97438 * 16 15 14 18 18 N 1.35883 * 108.46893 * 359.75699 * 16 15 14 19 19 H 0.96990 * 126.47516 * 180.27189 * 18 16 15 20 20 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 22 22 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 23 23 H 0.97006 * 119.99857 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.47398 * 54.99853 * 12 2 1 25 25 H 1.09001 * 109.47194 * 175.00033 * 12 2 1 26 26 H 1.07999 * 125.86503 * 359.97438 * 14 13 12 27 27 H 0.96699 * 114.00005 * 89.97350 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6308 -1.7569 -3.7118 12 6 2.0400 -0.7213 1.2493 13 6 1.6413 0.0571 2.4766 14 6 0.4684 -0.0218 3.1284 15 7 0.5061 0.8288 4.1677 16 6 1.6662 1.4374 4.1874 17 8 2.0589 2.3643 5.0943 18 7 2.4107 0.9786 3.1474 19 1 3.3133 1.2512 2.9199 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7090 1.1612 -3.4845 24 1 1.6053 -1.7198 1.2952 25 1 3.1263 -0.7995 1.2057 26 1 -0.3617 -0.6595 2.8623 27 1 2.4999 1.9928 5.8706 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259366.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = 4.304748 kcal Electronic energy + Delta-G solvation = -12134.431382 eV Core-core repulsion = 9893.321127 eV Total energy + Delta-G solvation = -2241.110255 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.63083 -37.19546 -35.00724 -32.29301 -31.60332 -28.31747 -25.56932 -24.74415 -21.46979 -20.72290 -19.72065 -18.52840 -16.50191 -16.29903 -15.17028 -14.60726 -13.81434 -13.62588 -13.23432 -12.75027 -12.50359 -11.78971 -11.34845 -11.16943 -10.92675 -10.63468 -10.16504 -9.91891 -9.81933 -9.54027 -9.47645 -8.82935 -8.36508 -7.69975 -6.01000 -4.09354 2.25895 2.97137 3.28348 3.35477 3.37324 3.42187 4.33691 4.41352 5.29480 5.40879 5.69268 5.88585 6.04627 6.42790 6.62298 6.68807 6.86095 7.01658 7.17457 7.23757 7.38466 7.69900 7.92849 7.98107 8.15277 8.31003 8.39761 8.94595 9.56082 11.04489 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.076734 B = 0.007927 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.807831 B = 3531.284498 C = 3582.079816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 H 0.022 0.978 4 C -0.518 4.518 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.043 4.043 13 C 0.032 3.968 14 C -0.029 4.029 15 N -0.483 5.483 16 C 0.346 3.654 17 O -0.446 6.446 18 N -0.571 5.571 19 H 0.416 0.584 20 H 0.026 0.974 21 H 0.015 0.985 22 H 0.079 0.921 23 H 0.260 0.740 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.173 0.827 27 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 -1.349 9.664 10.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 H 0.041 0.959 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.081 4.081 13 C -0.083 4.083 14 C -0.175 4.175 15 N -0.213 5.213 16 C 0.046 3.954 17 O -0.245 6.245 18 N -0.188 5.188 19 H 0.254 0.746 20 H 0.045 0.955 21 H 0.034 0.966 22 H 0.098 0.902 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.190 0.810 27 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.686 -0.625 9.806 10.186 hybrid contribution 1.639 -0.542 -1.178 2.090 sum 4.325 -1.166 8.628 9.721 Atomic orbital electron populations 1.21860 0.98314 0.99054 1.00548 1.18643 0.93243 0.95439 0.89555 0.95938 1.21154 1.31458 1.12482 0.90510 0.92571 1.24967 0.95037 0.94937 0.99006 1.69908 1.36548 1.22790 1.23351 0.86606 0.79223 0.79416 0.82800 1.20637 1.21298 1.19962 1.20506 1.00320 0.97653 0.89653 1.21814 0.93352 0.94953 0.98192 1.21896 0.98113 1.02603 0.94853 1.70358 1.17697 1.10155 1.23118 1.20152 0.88479 0.96764 0.90031 1.84923 1.78596 1.28884 1.32108 1.43744 1.16519 1.33709 1.24854 0.74636 0.95497 0.96552 0.90204 0.92982 0.90239 0.92329 0.81012 0.75296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.65 37.16 0.32 -3.03 15 2 C 0.05 1.20 2.29 -91.77 -0.21 0.99 15 3 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 4 C -0.52 -13.70 8.56 -34.44 -0.29 -13.99 15 5 H 0.06 1.44 7.74 -52.49 -0.41 1.03 15 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 15 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 15 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 12 C -0.04 -0.82 5.18 -27.88 -0.14 -0.97 15 13 C 0.03 0.58 6.10 -81.39 -0.50 0.08 15 14 C -0.03 -0.53 10.08 -17.79 -0.18 -0.71 15 15 N -0.48 -9.12 11.28 -14.73 -0.17 -9.28 15 16 C 0.35 5.75 9.49 -89.17 -0.85 4.91 15 17 O -0.45 -5.94 13.64 -18.19 -0.25 -6.19 15 18 N -0.57 -9.10 6.22 -10.26 -0.06 -9.16 15 19 H 0.42 5.43 8.96 -40.82 -0.37 5.07 15 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.02 0.35 6.18 -51.93 -0.32 0.03 15 22 H 0.08 2.15 6.07 -51.93 -0.32 1.83 15 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 24 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.17 2.91 8.02 -52.49 -0.42 2.49 15 27 H 0.39 2.90 9.06 45.56 0.41 3.32 15 LS Contribution 235.88 15.07 3.55 3.55 Total: -1.00 -31.29 235.88 -5.50 -36.79 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -2.24 Total: 4.24 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.94 Total: -11.11 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.40 Total: -43.09 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.25 Total: -6.19 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.29 -5.50 -36.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259366.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.094 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds