Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 5 5 H 1.07994 * 120.00251 * 240.00374 * 4 2 1 6 6 C 1.37882 * 119.99770 * 60.00288 * 4 2 1 7 7 N 1.31514 * 119.99961 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46995 * 89.99984 * 8 6 4 10 10 H 1.48499 * 109.47028 * 210.00243 * 8 6 4 11 11 H 1.48497 * 109.47127 * 330.00255 * 8 6 4 12 12 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 13 13 C 1.50703 * 109.46912 * 294.99775 * 12 2 1 14 14 C 1.34417 * 126.54323 * 85.02678 * 13 12 2 15 15 N 1.34360 * 108.26566 * 179.97438 * 14 13 12 16 16 C 1.31016 * 109.30351 * 359.97438 * 15 14 13 17 17 O 1.35499 * 125.76554 * 179.97438 * 16 15 14 18 18 N 1.35883 * 108.46893 * 359.75699 * 16 15 14 19 19 H 0.96990 * 126.47516 * 180.27189 * 18 16 15 20 20 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 22 22 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 23 23 H 0.97006 * 119.99857 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.47398 * 54.99853 * 12 2 1 25 25 H 1.09001 * 109.47194 * 175.00033 * 12 2 1 26 26 H 1.07999 * 125.86503 * 359.97438 * 14 13 12 27 27 H 0.96699 * 114.00005 * 89.97350 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6308 -1.7569 -3.7118 12 6 2.0400 -0.7213 1.2493 13 6 1.6413 0.0571 2.4766 14 6 0.4684 -0.0218 3.1284 15 7 0.5061 0.8288 4.1677 16 6 1.6662 1.4374 4.1874 17 8 2.0589 2.3643 5.0943 18 7 2.4107 0.9786 3.1474 19 1 3.3133 1.2512 2.9199 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7090 1.1612 -3.4845 24 1 1.6053 -1.7198 1.2952 25 1 3.1263 -0.7995 1.2057 26 1 -0.3617 -0.6595 2.8623 27 1 2.4999 1.9928 5.8706 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259366.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = -20.606757 kcal Electronic energy + Delta-G solvation = -12135.511626 eV Core-core repulsion = 9893.321127 eV Total energy + Delta-G solvation = -2242.190499 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.95980 -38.35186 -36.81293 -33.88502 -33.26587 -29.92924 -27.39998 -26.51830 -22.82667 -22.16769 -21.36969 -19.81748 -18.31947 -17.74313 -16.67345 -16.35453 -15.39336 -14.99815 -14.81351 -14.38892 -14.06589 -13.37318 -13.02284 -12.81802 -12.74930 -12.43382 -12.11264 -11.70080 -11.49461 -11.03265 -10.97894 -10.75464 -10.41646 -9.09791 -8.05857 -6.20992 0.96875 1.44951 1.46085 1.55394 1.72935 2.06130 2.46423 3.16578 3.22513 4.10756 4.28234 4.51273 4.67275 4.74446 4.94745 5.12041 5.25127 5.30948 5.51710 5.64315 5.67778 5.96485 6.06772 6.17647 6.38090 6.87016 6.92527 6.97595 7.48405 8.98692 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.076734 B = 0.007927 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.807831 B = 3531.284498 C = 3582.079816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.048 3.952 3 H -0.012 1.012 4 C -0.530 4.530 5 H 0.063 0.937 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.264 1.264 12 C -0.028 4.028 13 C 0.018 3.982 14 C -0.035 4.035 15 N -0.516 5.516 16 C 0.361 3.639 17 O -0.446 6.446 18 N -0.563 5.563 19 H 0.429 0.571 20 H 0.035 0.965 21 H 0.027 0.973 22 H 0.046 0.954 23 H 0.259 0.741 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.180 0.820 27 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 -2.035 10.335 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.029 3.971 3 H 0.006 0.994 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.188 1.188 12 C -0.066 4.066 13 C -0.098 4.098 14 C -0.181 4.181 15 N -0.247 5.247 16 C 0.060 3.940 17 O -0.250 6.250 18 N -0.181 5.181 19 H 0.269 0.731 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.197 0.803 27 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 3.644 -1.323 10.505 11.197 hybrid contribution 1.372 -0.251 -1.277 1.891 sum 5.017 -1.574 9.228 10.620 Atomic orbital electron populations 1.21696 0.98390 0.99169 0.99387 1.18575 0.93180 0.93900 0.91447 0.99387 1.21581 1.31122 1.12594 0.91512 0.91865 1.25778 0.95328 0.95636 1.02136 1.70064 1.37897 1.24334 1.23778 0.85599 0.79061 0.78192 0.79043 1.20201 1.21565 1.18816 1.20207 1.00885 0.97606 0.87922 1.21539 0.93810 0.96088 0.98328 1.22110 0.98462 1.02700 0.94854 1.70359 1.19048 1.11400 1.23912 1.20276 0.87980 0.95605 0.90140 1.84876 1.78848 1.28371 1.32864 1.43672 1.17008 1.33051 1.24400 0.73112 0.94616 0.95424 0.93531 0.93233 0.89137 0.91196 0.80297 0.71900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 8.65 71.98 0.62 -5.54 15 2 C 0.05 2.30 2.29 -11.54 -0.03 2.27 15 3 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 15 4 C -0.53 -27.75 8.56 25.60 0.22 -27.53 15 5 H 0.06 3.15 7.74 -2.91 -0.02 3.13 15 6 C 0.01 0.52 5.30 84.66 0.45 0.96 15 7 N -0.92 -53.22 11.32 21.45 0.24 -52.98 15 8 Si 0.96 42.46 29.54 68.60 2.03 44.48 15 9 H -0.28 -12.02 7.11 99.48 0.71 -11.32 15 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 15 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 12 C -0.03 -1.02 5.18 29.85 0.15 -0.87 15 13 C 0.02 0.62 6.10 40.79 0.25 0.87 15 14 C -0.04 -1.26 10.08 83.43 0.84 -0.42 15 15 N -0.52 -18.69 11.28 -314.08 -3.54 -22.23 15 16 C 0.36 11.25 9.49 179.84 1.71 12.96 15 17 O -0.45 -10.64 13.64 -88.00 -1.20 -11.84 15 18 N -0.56 -16.87 6.22 -297.43 -1.85 -18.72 15 19 H 0.43 10.32 8.96 -92.72 -0.83 9.49 15 20 H 0.03 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.03 1.21 6.18 -2.39 -0.01 1.20 15 22 H 0.05 2.54 6.07 -2.38 -0.01 2.52 15 23 H 0.26 14.31 8.31 -92.70 -0.77 13.54 15 24 H 0.09 3.15 8.14 -2.39 -0.02 3.13 15 25 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 26 H 0.18 5.87 8.02 -2.91 -0.02 5.84 15 27 H 0.42 4.83 9.06 -74.06 -0.67 4.15 15 Total: -1.00 -65.85 235.88 -0.41 -66.26 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.30 Total: 12.32 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.22 Total: -17.30 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -5.15 Total: -93.93 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.20 Total: -11.84 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.85 -0.41 -66.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259366.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.658 kcal (2) G-P(sol) polarization free energy of solvation -65.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds