Wall clock time and date at job start Mon Mar 30 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50704 * 109.46956 * 2 1 4 4 N 1.30255 * 125.61582 * 89.98122 * 3 2 1 5 5 C 1.34481 * 108.70087 * 180.02562 * 4 3 2 6 6 C 1.34329 * 107.66785 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.44324 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47188 * 20.00142 * 7 6 5 9 9 N 1.46905 * 109.47125 * 139.99921 * 7 6 5 10 10 C 1.50703 * 109.47094 * 259.99848 * 7 6 5 11 11 H 1.08000 * 119.99934 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99701 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00608 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 119.99602 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47202 * 60.00054 * 14 12 10 16 16 H 1.48506 * 109.46657 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46909 * 299.99574 * 14 12 10 18 18 O 1.33965 * 125.62195 * 270.30926 * 3 2 1 19 19 H 1.09000 * 109.46548 * 299.99536 * 1 2 3 20 20 H 1.09003 * 109.46844 * 59.99515 * 1 2 3 21 21 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46548 * 240.00463 * 2 1 3 23 23 H 1.08996 * 109.47221 * 120.00555 * 2 1 3 24 24 H 1.07992 * 126.16195 * 179.97438 * 5 4 3 25 25 H 1.00901 * 110.99869 * 296.04907 * 9 7 6 26 26 H 1.00896 * 110.99543 * 60.00030 * 9 7 6 27 27 H 0.96991 * 120.00497 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2849 2.1361 1.0589 5 6 2.7133 3.3494 0.6676 6 6 2.7198 3.3658 -0.6756 7 6 3.1281 4.5196 -1.5547 8 1 3.7453 5.2119 -0.9822 9 7 3.8943 4.0141 -2.7017 10 6 1.8971 5.2348 -2.0489 11 1 0.9171 4.8886 -1.7553 12 6 2.0220 6.3316 -2.8749 13 7 3.2154 6.7534 -3.2321 14 14 0.4961 7.2185 -3.4869 15 1 -0.2782 7.7291 -2.3272 16 1 0.8985 8.3554 -4.3534 17 1 -0.3450 6.2756 -4.2672 18 8 2.2869 2.1585 -1.0890 19 1 -0.3632 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.0004 4.1636 1.3164 25 1 4.7571 3.5866 -2.4000 26 1 3.3434 3.3697 -3.2487 27 1 3.3032 7.5252 -3.8129 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261503.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:40 Heat of formation + Delta-G solvation = -12.867667 kcal Electronic energy + Delta-G solvation = -12219.416646 eV Core-core repulsion = 9977.561739 eV Total energy + Delta-G solvation = -2241.854907 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.18249 -36.78968 -35.67310 -34.66917 -33.50996 -30.05804 -27.96842 -25.47515 -23.90796 -22.75247 -21.52370 -18.74201 -17.93471 -17.33339 -16.68665 -16.26251 -15.61678 -15.55026 -14.67731 -14.47313 -14.07995 -13.56047 -13.39668 -12.82009 -12.75003 -12.60627 -12.22078 -12.14019 -12.02207 -11.64227 -11.46254 -10.63803 -9.58320 -9.15186 -8.08520 -6.32607 0.63186 1.42939 1.43466 1.51451 1.75425 1.86647 2.42934 3.15696 3.18864 4.04419 4.16444 4.23635 4.27032 4.39778 4.48229 4.76254 4.90951 4.96380 5.09393 5.26281 5.33358 5.50683 5.63940 5.93483 6.44959 6.79516 6.89955 7.07103 7.40226 8.94630 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.045785 B = 0.010007 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.408084 B = 2797.423243 C = 3060.902692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 C 0.158 3.842 4 N -0.503 5.503 5 C -0.083 4.083 6 C -0.042 4.042 7 C 0.305 3.695 8 H 0.053 0.947 9 N -0.813 5.813 10 C -0.559 4.559 11 H 0.041 0.959 12 C 0.044 3.956 13 N -0.873 5.873 14 Si 0.954 3.046 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.275 1.275 18 O -0.212 6.212 19 H 0.049 0.951 20 H 0.045 0.955 21 H 0.104 0.896 22 H 0.109 0.891 23 H 0.120 0.880 24 H 0.187 0.813 25 H 0.316 0.684 26 H 0.327 0.673 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.039 -10.897 3.828 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.057 4.057 3 C -0.049 4.049 4 N -0.232 5.232 5 C -0.220 4.220 6 C -0.098 4.098 7 C 0.194 3.806 8 H 0.071 0.929 9 N -0.339 5.339 10 C -0.597 4.597 11 H 0.059 0.941 12 C -0.162 4.162 13 N -0.507 5.507 14 Si 0.779 3.221 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.200 1.200 18 O -0.099 6.099 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.123 0.877 22 H 0.128 0.872 23 H 0.138 0.862 24 H 0.204 0.796 25 H 0.128 0.872 26 H 0.139 0.861 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.953 -10.206 4.041 11.367 hybrid contribution -0.600 0.222 -0.435 0.773 sum -3.553 -9.983 3.606 11.193 Atomic orbital electron populations 1.21770 0.92598 1.04242 1.01690 1.20279 0.97191 0.81781 1.06466 1.27338 1.00656 0.98378 0.78498 1.70285 1.17571 1.04139 1.31243 1.23190 1.08498 0.96773 0.93568 1.25939 1.00215 0.86487 0.97168 1.17719 0.93062 0.84247 0.85609 0.92939 1.58917 1.07353 1.43832 1.23761 1.20955 0.91252 1.14117 1.33369 0.94076 1.25611 0.98508 0.96831 0.95231 1.70167 1.23305 1.23924 1.33310 0.85713 0.79881 0.78141 0.78378 1.19768 1.20280 1.20021 1.84363 1.64031 1.23103 1.38429 0.93169 0.93607 0.87724 0.87234 0.86208 0.79603 0.87239 0.86140 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.90 71.99 0.71 -2.29 15 2 C -0.02 -0.44 6.56 29.85 0.20 -0.25 15 3 C 0.16 5.70 7.60 88.34 0.67 6.37 15 4 N -0.50 -20.03 11.29 -303.83 -3.43 -23.46 15 5 C -0.08 -3.52 11.80 83.39 0.98 -2.53 15 6 C -0.04 -1.92 6.12 24.79 0.15 -1.77 15 7 C 0.30 15.41 3.08 43.42 0.13 15.54 15 8 H 0.05 2.83 8.14 -2.39 -0.02 2.81 15 9 N -0.81 -38.57 8.53 -174.95 -1.49 -40.07 15 10 C -0.56 -31.12 8.71 25.60 0.22 -30.90 15 11 H 0.04 2.34 7.74 -2.91 -0.02 2.32 15 12 C 0.04 2.39 5.39 84.65 0.46 2.85 15 13 N -0.87 -49.83 12.77 21.45 0.27 -49.55 15 14 Si 0.95 43.36 29.54 68.60 2.03 45.39 15 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 18 O -0.21 -8.96 10.70 -3.74 -0.04 -9.00 15 19 H 0.05 1.15 8.14 -2.39 -0.02 1.13 15 20 H 0.04 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.10 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.11 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.12 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.19 7.17 8.06 -2.91 -0.02 7.14 15 25 H 0.32 13.29 9.06 -89.69 -0.81 12.47 15 26 H 0.33 15.18 8.92 -89.70 -0.80 14.38 15 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 15 Total: -1.00 -64.25 244.25 0.44 -63.81 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.43 Total: 25.87 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 3.53 Total: -12.98 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -4.65 Total: -113.08 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.04 Total: -9.00 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.25 0.44 -63.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261503.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.943 kcal (2) G-P(sol) polarization free energy of solvation -64.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds