Wall clock time and date at job start Mon Mar 30 2020 02:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47133 * 2 1 4 4 N 1.30259 * 125.61904 * 89.97720 * 3 2 1 5 5 C 1.34469 * 108.69820 * 179.77866 * 4 3 2 6 6 C 1.34329 * 107.67122 * 0.39253 * 5 4 3 7 7 C 1.50700 * 126.44183 * 179.87560 * 6 5 4 8 8 H 1.08997 * 109.47388 * 339.71462 * 7 6 5 9 9 N 1.46898 * 109.47243 * 219.70945 * 7 6 5 10 10 C 1.50699 * 109.46992 * 99.71237 * 7 6 5 11 11 H 1.08004 * 119.99982 * 5.17036 * 10 7 6 12 12 C 1.37878 * 120.00207 * 185.16511 * 10 7 6 13 13 N 1.31517 * 120.00264 * 186.64262 * 12 10 7 14 14 Si 1.86802 * 119.99777 * 6.37390 * 12 10 7 15 15 H 1.48493 * 109.46959 * 270.27035 * 14 12 10 16 16 H 1.48493 * 109.46988 * 30.27436 * 14 12 10 17 17 H 1.48501 * 109.46785 * 150.27015 * 14 12 10 18 18 O 1.33963 * 125.61948 * 269.99954 * 3 2 1 19 19 H 1.08993 * 109.47315 * 59.99797 * 1 2 3 20 20 H 1.08996 * 109.47232 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46965 * 300.00138 * 1 2 3 22 22 H 1.08995 * 109.47184 * 240.00291 * 2 1 3 23 23 H 1.08999 * 109.47446 * 119.99797 * 2 1 3 24 24 H 1.08003 * 126.16453 * 180.26423 * 5 4 3 25 25 H 1.00895 * 111.00293 * 173.96317 * 9 7 6 26 26 H 1.00908 * 111.00164 * 297.92576 * 9 7 6 27 27 H 0.97005 * 119.99715 * 354.66587 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7184 3.3474 0.6675 6 6 2.7194 3.3658 -0.6756 7 6 3.1276 4.5197 -1.5548 8 1 3.0824 5.4462 -0.9826 9 7 2.2148 4.6077 -2.7024 10 6 4.5349 4.3021 -2.0480 11 1 5.0492 3.3793 -1.8235 12 6 5.1659 5.2810 -2.7859 13 7 6.3408 5.0423 -3.3267 14 14 4.3487 6.9439 -3.0238 15 1 3.5031 6.9097 -4.2440 16 1 3.5025 7.2529 -1.8434 17 1 5.3913 7.9908 -3.1732 18 8 2.2924 2.1564 -1.0890 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.0110 4.1599 1.3162 25 1 2.4058 5.4306 -3.2541 26 1 2.2636 3.7736 -3.2682 27 1 6.7985 4.2070 -3.1431 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261504.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:42 Heat of formation + Delta-G solvation = 6.556033 kcal Electronic energy + Delta-G solvation = -12247.628446 eV Core-core repulsion = 10006.615814 eV Total energy + Delta-G solvation = -2241.012632 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.59280 -35.32875 -34.14262 -33.44132 -31.90416 -28.73073 -25.91790 -23.99922 -22.25637 -21.04574 -19.82453 -17.92295 -16.42843 -15.88658 -15.46673 -14.38581 -14.06431 -13.76651 -13.33937 -12.81888 -12.61667 -12.32279 -11.96010 -11.72848 -11.48251 -11.08517 -10.65669 -10.60025 -10.15409 -9.94868 -9.38899 -8.77149 -8.14092 -7.71174 -6.64104 -4.43829 2.24349 3.17500 3.26240 3.33807 3.37823 3.39127 4.21954 4.54292 5.00117 5.12019 5.25487 5.41549 5.55318 5.78320 5.81045 5.91895 6.06847 6.16563 6.29130 6.64440 6.87011 7.01719 7.48172 7.97302 8.11777 8.26239 8.40695 8.61637 9.30849 10.66972 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.062671 B = 0.009510 C = 0.009345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.667058 B = 2943.637968 C = 2995.496709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.018 4.018 3 C 0.146 3.854 4 N -0.480 5.480 5 C -0.084 4.084 6 C 0.044 3.956 7 C 0.251 3.749 8 H 0.074 0.926 9 N -0.851 5.851 10 C -0.629 4.629 11 H 0.059 0.941 12 C 0.033 3.967 13 N -0.895 5.895 14 Si 1.047 2.953 15 H -0.277 1.277 16 H -0.273 1.273 17 H -0.281 1.281 18 O -0.195 6.195 19 H 0.059 0.941 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.176 0.824 25 H 0.327 0.673 26 H 0.336 0.664 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.129 -5.061 3.777 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.056 4.056 3 C -0.061 4.061 4 N -0.210 5.210 5 C -0.223 4.223 6 C -0.011 4.011 7 C 0.141 3.859 8 H 0.092 0.908 9 N -0.383 5.383 10 C -0.669 4.669 11 H 0.077 0.923 12 C -0.174 4.174 13 N -0.528 5.528 14 Si 0.874 3.126 15 H -0.204 1.204 16 H -0.199 1.199 17 H -0.207 1.207 18 O -0.080 6.080 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.080 0.920 22 H 0.105 0.895 23 H 0.115 0.885 24 H 0.193 0.807 25 H 0.141 0.859 26 H 0.148 0.852 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.613 -3.787 4.131 11.128 hybrid contribution 1.090 -1.273 -0.396 1.722 sum -8.523 -5.060 3.735 10.592 Atomic orbital electron populations 1.21764 0.93756 1.02163 1.02895 1.19845 0.96339 0.85118 1.04294 1.25932 1.03584 0.97069 0.79490 1.70224 1.16123 1.04070 1.30586 1.22781 1.09605 0.96598 0.93284 1.24068 0.96670 0.85090 0.95257 1.18213 0.91121 0.88357 0.88196 0.90828 1.59611 1.57233 1.07623 1.13798 1.22625 0.99245 1.05616 1.39376 0.92297 1.25890 0.96204 1.02952 0.92370 1.70796 1.14803 1.28002 1.39206 0.83939 0.75791 0.75650 0.77201 1.20404 1.19884 1.20729 1.84370 1.63657 1.22824 1.37195 0.92163 0.91524 0.92016 0.89545 0.88481 0.80722 0.85885 0.85214 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.30 15 2 C -0.02 -0.24 6.56 -27.88 -0.18 -0.42 15 3 C 0.15 2.80 7.60 -12.94 -0.10 2.70 15 4 N -0.48 -9.94 11.29 -11.10 -0.13 -10.06 15 5 C -0.08 -1.82 11.80 -17.78 -0.21 -2.03 15 6 C 0.04 1.01 6.14 -35.69 -0.22 0.79 15 7 C 0.25 6.01 2.70 -70.02 -0.19 5.82 15 8 H 0.07 1.73 6.63 -51.93 -0.34 1.39 15 9 N -0.85 -18.76 9.18 -6.65 -0.06 -18.82 15 10 C -0.63 -17.34 9.07 -34.44 -0.31 -17.65 15 11 H 0.06 1.81 7.98 -52.48 -0.42 1.39 15 12 C 0.03 0.91 5.46 -17.82 -0.10 0.81 15 13 N -0.90 -26.61 13.70 55.43 0.76 -25.85 15 14 Si 1.05 23.60 25.53 -169.99 -4.34 19.26 15 15 H -0.28 -5.82 6.92 56.52 0.39 -5.43 15 16 H -0.27 -5.73 6.37 56.52 0.36 -5.37 15 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 18 O -0.19 -4.29 10.76 5.39 0.06 -4.23 15 19 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.07 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.09 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.10 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.18 3.33 8.06 -52.48 -0.42 2.91 15 25 H 0.33 6.97 5.44 -39.29 -0.21 6.75 15 26 H 0.34 7.35 8.96 -39.29 -0.35 7.00 15 27 H 0.27 8.12 8.72 -40.82 -0.36 7.76 15 LS Contribution 236.59 15.07 3.57 3.57 Total: -1.00 -30.79 236.59 -4.15 -34.94 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -3.07 Total: 12.48 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.94 Total: -11.28 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.57 Total: -54.74 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: 0.06 Total: -4.23 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.34 Total: 19.26 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.79 -4.15 -34.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261504.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.497 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds