Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86794 * 120.00326 * 2 1 4 4 H 1.48504 * 109.46692 * 266.44099 * 3 2 1 5 5 H 1.48500 * 109.47131 * 26.43600 * 3 2 1 6 6 H 1.48497 * 109.47715 * 146.44031 * 3 2 1 7 7 C 1.38883 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00034 * 337.38638 * 7 2 1 9 9 N 1.37193 * 119.99550 * 157.38462 * 7 2 1 10 10 C 1.33905 * 125.34613 * 159.11825 * 9 7 2 11 11 O 1.21586 * 123.02947 * 359.97438 * 10 9 7 12 12 N 1.36143 * 114.25919 * 180.51082 * 10 9 7 13 13 C 1.46987 * 108.06059 * 359.24254 * 12 10 9 14 14 H 1.08998 * 112.02021 * 122.37677 * 13 12 10 15 15 C 1.54172 * 109.27083 * 247.05046 * 13 12 10 16 16 C 1.54843 * 104.30888 * 88.75438 * 15 13 12 17 17 C 1.54848 * 102.73425 * 38.15806 * 16 15 13 18 18 C 1.46980 * 125.35234 * 339.15005 * 9 7 2 19 19 H 1.09005 * 112.02215 * 58.84035 * 18 9 7 20 20 H 0.97002 * 119.99700 * 0.02562 * 1 2 3 21 21 H 0.97006 * 126.58994 * 179.48564 * 12 10 9 22 22 H 1.09005 * 110.46535 * 330.04216 * 15 13 12 23 23 H 1.09000 * 110.57215 * 207.51757 * 15 13 12 24 24 H 1.09001 * 110.76000 * 156.46696 * 16 15 13 25 25 H 1.08999 * 110.76206 * 279.84792 * 16 15 13 26 26 H 1.08997 * 110.46980 * 80.55353 * 17 16 15 27 27 H 1.09002 * 110.46632 * 203.14160 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6176 0.0000 4 1 2.5716 2.0028 -1.3974 5 1 1.4107 2.6732 0.6233 6 1 3.5067 1.4630 0.7739 7 6 2.0091 -1.2028 0.0005 8 1 1.5314 -2.1019 0.3606 9 7 3.3019 -1.2486 -0.4563 10 6 4.1956 -2.2003 -0.1584 11 8 3.9428 -3.1431 0.5666 12 7 5.4186 -2.0172 -0.7277 13 6 5.3654 -0.7917 -1.5375 14 1 6.1147 -0.0637 -1.2268 15 6 5.5028 -1.1604 -3.0282 16 6 4.0487 -1.4171 -3.4945 17 6 3.2495 -0.3305 -2.7340 18 6 3.9239 -0.2606 -1.3492 19 1 3.9086 0.7424 -0.9228 20 1 -0.4850 0.8401 -0.0004 21 1 6.1949 -2.5901 -0.6271 22 1 6.1049 -2.0616 -3.1439 23 1 5.9425 -0.3349 -3.5880 24 1 3.9586 -1.2797 -4.5720 25 1 3.7195 -2.4143 -3.2022 26 1 3.3287 0.6288 -3.2453 27 1 2.2048 -0.6253 -2.6346 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -3.803506 kcal Electronic energy + Delta-G solvation = -13133.066681 eV Core-core repulsion = 10891.604826 eV Total energy + Delta-G solvation = -2241.461855 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.60156 -36.46799 -34.13824 -32.82070 -31.61284 -27.54136 -26.74405 -25.03443 -20.48057 -20.31653 -19.85009 -17.30506 -16.64109 -15.60122 -15.02633 -14.92612 -14.37544 -13.55453 -13.09494 -12.53548 -12.29130 -12.18114 -11.66340 -11.25334 -11.17372 -10.86164 -10.55000 -10.38396 -10.19700 -9.73714 -9.15979 -8.86136 -8.37449 -7.87107 -6.34558 -3.81312 3.05589 3.22186 3.24679 3.78127 4.11356 4.19474 4.67977 4.85869 4.93603 5.19938 5.32077 5.52008 5.70734 5.73120 5.98424 6.01207 6.10884 6.21143 6.32250 6.52671 6.67330 6.88702 7.72010 7.95462 8.28847 8.64359 9.04797 9.36049 10.02660 10.78558 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.036931 B = 0.019051 C = 0.015779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.998483 B = 1469.354730 C = 1774.101042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.057 3.943 3 Si 0.872 3.128 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.289 4.289 8 H 0.114 0.886 9 N -0.472 5.472 10 C 0.661 3.339 11 O -0.609 6.609 12 N -0.758 5.758 13 C 0.122 3.878 14 H 0.084 0.916 15 C -0.132 4.132 16 C -0.118 4.118 17 C -0.130 4.130 18 C 0.099 3.901 19 H 0.078 0.922 20 H 0.273 0.727 21 H 0.417 0.583 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.975 3.223 -7.691 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.148 4.148 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.415 4.415 8 H 0.132 0.868 9 N -0.198 5.198 10 C 0.363 3.637 11 O -0.490 6.490 12 N -0.423 5.423 13 C 0.015 3.985 14 H 0.102 0.898 15 C -0.171 4.171 16 C -0.156 4.156 17 C -0.168 4.168 18 C -0.006 4.006 19 H 0.095 0.905 20 H 0.084 0.916 21 H 0.257 0.743 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.432 2.871 -7.242 12.233 hybrid contribution 0.782 0.923 0.064 1.211 sum 10.213 3.793 -7.177 13.046 Atomic orbital electron populations 1.69769 1.05757 1.27695 1.47547 1.24997 0.95114 0.97598 0.97042 0.87148 0.79860 0.84292 0.78641 1.19549 1.21696 1.19778 1.18848 0.83316 0.97396 1.41955 0.86832 1.42965 1.10771 1.22312 1.43761 1.16430 0.80493 0.85029 0.81738 1.90783 1.80424 1.34489 1.43269 1.45605 1.13333 1.28317 1.55070 1.22329 0.96779 0.87900 0.91534 0.89799 1.22768 0.97942 1.01359 0.95032 1.22405 0.94247 0.99841 0.99060 1.22647 1.02017 0.98474 0.93696 1.22692 0.91085 0.94450 0.92347 0.90512 0.91633 0.74297 0.91182 0.91038 0.91649 0.91282 0.91563 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.14 13.96 55.49 0.77 -24.37 15 2 C 0.06 1.57 5.21 -17.46 -0.09 1.48 15 3 Si 0.87 20.52 24.08 -169.99 -4.09 16.43 15 4 H -0.27 -5.75 6.58 56.52 0.37 -5.38 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.27 -6.44 6.92 56.52 0.39 -6.05 15 7 C -0.29 -8.34 9.56 -14.91 -0.14 -8.48 15 8 H 0.11 3.66 8.00 -52.49 -0.42 3.24 15 9 N -0.47 -11.99 2.53 -110.91 -0.28 -12.27 15 10 C 0.66 16.56 8.58 -86.45 -0.74 15.82 15 11 O -0.61 -17.69 17.59 5.29 0.09 -17.60 15 12 N -0.76 -14.27 6.10 -56.71 -0.35 -14.62 15 13 C 0.12 2.01 4.58 -66.12 -0.30 1.71 15 14 H 0.08 1.18 8.14 -51.93 -0.42 0.75 15 15 C -0.13 -1.77 6.46 -25.15 -0.16 -1.94 15 16 C -0.12 -1.83 6.90 -24.79 -0.17 -2.00 15 17 C -0.13 -2.40 5.61 -25.14 -0.14 -2.54 15 18 C 0.10 2.05 2.68 -66.12 -0.18 1.87 15 19 H 0.08 1.63 3.36 -51.93 -0.17 1.45 15 20 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.42 6.54 8.96 -40.82 -0.37 6.17 15 22 H 0.07 0.86 8.08 -51.93 -0.42 0.44 15 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.09 2.02 7.41 -51.93 -0.38 1.64 15 LS Contribution 219.31 15.07 3.30 3.30 Total: -1.00 -32.62 219.31 -5.53 -38.15 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.05 Total: 5.07 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.93 Total: 5.91 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.15 Total: -51.26 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.09 Total: -17.60 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.09 Total: 16.43 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -32.62 -5.53 -38.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.345 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds