Wall clock time and date at job start Mon Mar 30 2020 01:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31474 * 1 3 3 Si 1.86804 * 120.00124 * 2 1 4 4 H 1.48491 * 109.47171 * 270.00362 * 3 2 1 5 5 H 1.48501 * 109.46736 * 30.00544 * 3 2 1 6 6 H 1.48500 * 109.46648 * 150.00207 * 3 2 1 7 7 C 1.38874 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00425 * 189.15966 * 7 2 1 9 9 N 1.37192 * 120.00056 * 9.15187 * 7 2 1 10 10 C 1.33904 * 125.34955 * 191.12444 * 9 7 2 11 11 O 1.21579 * 123.03283 * 359.96967 * 10 9 7 12 12 N 1.33905 * 113.94252 * 179.97438 * 10 9 7 13 13 C 1.46844 * 109.42337 * 359.97354 * 12 10 9 14 14 H 1.09003 * 112.89110 * 238.38950 * 13 12 10 15 15 C 1.54178 * 109.34911 * 113.02840 * 13 12 10 16 16 C 1.54848 * 104.41667 * 272.49681 * 15 13 12 17 17 C 1.54849 * 102.73425 * 321.77294 * 16 15 13 18 18 C 1.46987 * 125.34982 * 11.10388 * 9 7 2 19 19 H 1.08997 * 112.02615 * 302.17757 * 18 9 7 20 20 H 0.96997 * 119.99776 * 359.97438 * 1 2 3 21 21 H 0.97001 * 125.35161 * 179.97438 * 12 10 9 22 22 H 1.08992 * 110.46466 * 153.72455 * 15 13 12 23 23 H 1.09003 * 110.46283 * 31.26740 * 15 13 12 24 24 H 1.09002 * 110.76007 * 80.08796 * 16 15 13 25 25 H 1.09009 * 110.75680 * 203.28278 * 16 15 13 26 26 H 1.09009 * 110.46494 * 156.86340 * 17 16 15 27 27 H 1.09003 * 110.46703 * 279.44657 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 2.4962 2.0465 -1.4000 5 1 1.4462 2.6526 0.7002 6 1 3.5463 1.4400 0.7000 7 6 2.0091 -1.2027 -0.0005 8 1 3.0788 -1.2088 0.1483 9 7 1.3362 -2.3832 -0.1900 10 6 1.8494 -3.6059 -0.0040 11 8 2.9935 -3.7960 0.3606 12 7 0.9889 -4.6005 -0.2559 13 6 -0.3010 -4.0362 -0.6732 14 1 -1.1260 -4.3433 -0.0304 15 6 -0.5590 -4.3900 -2.1515 16 6 0.1221 -3.2484 -2.9456 17 6 -0.1843 -2.0010 -2.0808 18 6 -0.0614 -2.5044 -0.6287 19 1 -0.7468 -1.9862 0.0419 20 1 -0.4850 0.8400 0.0004 21 1 1.1858 -5.5469 -0.1754 22 1 -1.6291 -4.4115 -2.3571 23 1 -0.1050 -5.3497 -2.3985 24 1 1.1970 -3.4149 -3.0165 25 1 -0.3186 -3.1517 -3.9380 26 1 0.5451 -1.2144 -2.2745 27 1 -1.1947 -1.6412 -2.2753 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261264583.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:49 Heat of formation + Delta-G solvation = -35.689385 kcal Electronic energy + Delta-G solvation = -13092.686965 eV Core-core repulsion = 10849.842435 eV Total energy + Delta-G solvation = -2242.844531 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.09072 -38.07912 -36.01428 -34.36795 -32.96234 -28.84025 -28.04061 -26.71426 -22.04617 -21.48975 -21.41036 -19.04054 -17.69637 -17.21087 -16.86806 -16.02493 -15.73436 -15.17611 -15.04932 -14.31686 -13.48267 -13.42631 -12.90055 -12.57569 -12.44468 -12.23681 -12.08207 -11.85579 -11.81248 -11.44461 -11.00587 -10.82981 -10.01219 -9.54043 -8.21685 -5.83534 1.41489 1.42818 1.54009 2.20510 2.38288 2.59982 3.23114 3.56036 3.71145 3.94971 4.18575 4.44684 4.61250 4.81715 4.91484 4.99002 5.05857 5.11659 5.21126 5.44205 5.54706 5.65172 5.66574 6.25458 6.47646 6.79699 7.32149 7.53521 8.29071 8.80744 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043115 B = 0.015901 C = 0.013063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.274063 B = 1760.463214 C = 2142.899743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.001 3.999 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.279 1.279 7 C -0.319 4.319 8 H 0.068 0.932 9 N -0.476 5.476 10 C 0.635 3.365 11 O -0.684 6.684 12 N -0.734 5.734 13 C 0.110 3.890 14 H 0.115 0.885 15 C -0.115 4.115 16 C -0.123 4.123 17 C -0.098 4.098 18 C 0.136 3.864 19 H 0.098 0.902 20 H 0.271 0.729 21 H 0.425 0.575 22 H 0.107 0.893 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.089 0.911 26 H 0.036 0.964 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 -4.372 -5.425 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.200 4.200 3 Si 0.812 3.188 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.204 1.204 7 C -0.447 4.447 8 H 0.086 0.914 9 N -0.199 5.199 10 C 0.336 3.664 11 O -0.572 6.572 12 N -0.396 5.396 13 C 0.005 3.995 14 H 0.133 0.867 15 C -0.153 4.153 16 C -0.161 4.161 17 C -0.136 4.136 18 C 0.032 3.968 19 H 0.116 0.884 20 H 0.081 0.919 21 H 0.267 0.733 22 H 0.125 0.875 23 H 0.099 0.901 24 H 0.048 0.952 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.902 -4.113 -5.230 9.587 hybrid contribution 0.833 0.560 0.278 1.042 sum -6.069 -3.553 -4.952 8.601 Atomic orbital electron populations 1.69931 1.06007 1.27925 1.49560 1.25785 0.96655 1.01172 0.96409 0.85017 0.77844 0.77468 0.78510 1.19666 1.19536 1.20410 1.19263 0.92055 0.82995 1.50412 0.91377 1.42977 1.12313 1.02877 1.61777 1.16327 0.84789 0.83063 0.82248 1.90681 1.20343 1.85740 1.60474 1.44823 1.12700 1.07305 1.74790 1.22953 0.86577 0.92272 0.97720 0.86701 1.22690 1.02442 0.98360 0.91852 1.22481 0.98917 0.95324 0.99360 1.22272 1.00860 0.97006 0.93502 1.22717 0.83996 0.92874 0.97260 0.88435 0.91886 0.73333 0.87452 0.90104 0.95152 0.89293 0.94500 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.31 9.80 21.65 0.21 -46.10 15 2 C 0.00 0.04 4.76 84.90 0.40 0.44 15 3 Si 0.99 43.15 29.56 68.60 2.03 45.18 15 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 7 C -0.32 -18.79 9.42 84.01 0.79 -18.00 15 8 H 0.07 4.30 7.71 -2.91 -0.02 4.28 15 9 N -0.48 -25.88 2.75 -625.04 -1.72 -27.59 15 10 C 0.63 34.02 8.55 179.60 1.54 35.56 15 11 O -0.68 -42.61 17.54 -3.97 -0.07 -42.68 15 12 N -0.73 -28.99 5.92 -453.75 -2.69 -31.67 15 13 C 0.11 3.69 4.67 46.05 0.22 3.91 15 14 H 0.12 3.15 8.14 -2.39 -0.02 3.13 15 15 C -0.12 -3.00 6.45 31.62 0.20 -2.79 15 16 C -0.12 -3.98 6.90 31.86 0.22 -3.76 15 17 C -0.10 -3.89 5.54 31.62 0.18 -3.72 15 18 C 0.14 5.96 3.06 46.02 0.14 6.11 15 19 H 0.10 4.68 6.55 -2.39 -0.02 4.66 15 20 H 0.27 13.19 8.31 -92.71 -0.77 12.41 15 21 H 0.43 14.03 8.96 -92.71 -0.83 13.20 15 22 H 0.11 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.08 1.89 8.09 -2.39 -0.02 1.87 15 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 25 H 0.09 2.32 8.14 -2.38 -0.02 2.30 15 26 H 0.04 1.75 6.95 -2.38 -0.02 1.74 15 27 H 0.08 2.73 8.14 -2.39 -0.02 2.71 15 Total: -1.00 -70.42 223.53 1.80 -68.62 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.35 Total: 16.51 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 3.69 Total: 17.75 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.19 Total: -105.37 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.07 Total: -42.68 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -70.42 1.80 -68.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264583.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.928 kcal (2) G-P(sol) polarization free energy of solvation -70.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds