Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47577 * 2 1 4 4 N 1.30499 * 125.65075 * 304.97794 * 3 2 1 5 5 C 1.34126 * 109.25746 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.99216 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47066 * 65.02992 * 6 5 4 8 8 O 1.42895 * 109.47590 * 185.02847 * 6 5 4 9 9 C 1.50706 * 109.47178 * 305.03199 * 6 5 4 10 10 H 1.07998 * 119.99629 * 359.97438 * 9 6 5 11 11 C 1.37875 * 119.99955 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99932 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 119.99908 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47474 * 89.99404 * 13 11 9 15 15 H 1.48504 * 109.47121 * 209.99526 * 13 11 9 16 16 H 1.48499 * 109.47026 * 329.99368 * 13 11 9 17 17 C 1.34671 * 108.01972 * 0.26871 * 5 4 3 18 18 N 1.35045 * 125.65038 * 124.99535 * 3 2 1 19 19 H 0.96997 * 126.39740 * 0.02562 * 18 3 2 20 20 H 1.09004 * 109.47030 * 59.99823 * 1 2 3 21 21 H 1.08997 * 109.47442 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46926 * 300.00234 * 1 2 3 23 23 H 1.09008 * 109.46889 * 239.99960 * 2 1 3 24 24 H 1.08997 * 109.47284 * 120.00517 * 2 1 3 25 25 H 0.96705 * 114.00010 * 59.99939 * 8 6 5 26 26 H 0.97003 * 119.99476 * 180.02562 * 12 11 9 27 27 H 1.08002 * 126.59357 * 179.69963 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.7129 2.3405 -0.8689 5 6 2.3469 3.4811 -0.5590 6 6 2.2484 4.7821 -1.3131 7 1 1.2310 5.1668 -1.2425 8 8 3.1563 5.7301 -0.7483 9 6 2.5990 4.5516 -2.7606 10 1 2.8667 3.5620 -3.1003 11 6 2.5788 5.6042 -3.6508 12 7 2.2532 6.8093 -3.2369 13 14 3.0140 5.3186 -5.4448 14 1 1.7845 4.9769 -6.2042 15 1 3.6182 6.5519 -6.0100 16 1 3.9855 4.2001 -5.5465 17 6 3.0921 3.2581 0.5403 18 7 2.8882 1.9530 0.8990 19 1 3.2877 1.4946 1.6547 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 4.0824 5.4532 -0.7769 26 1 2.2387 7.5498 -3.8634 27 1 3.7269 3.9724 1.0436 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261271722.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = -3.611473 kcal Electronic energy + Delta-G solvation = -12183.874984 eV Core-core repulsion = 9942.421456 eV Total energy + Delta-G solvation = -2241.453528 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.35890 -35.59187 -33.37177 -32.05099 -31.81810 -28.36290 -26.46721 -23.68173 -22.59775 -20.01176 -19.28641 -17.19350 -16.79895 -14.86723 -14.48790 -14.35691 -13.94647 -13.64680 -13.32894 -12.69511 -12.39583 -12.00001 -11.45047 -11.13621 -11.00079 -10.82747 -10.79581 -10.07383 -9.36738 -9.22008 -9.01789 -8.48708 -8.25349 -7.44662 -5.87725 -4.02142 2.69182 3.38345 3.43884 3.48125 3.65508 3.94905 4.53595 4.82984 5.13288 5.37243 5.43086 5.60705 5.77404 5.90209 6.09978 6.16567 6.32206 6.42649 6.60481 6.82924 7.54588 7.76696 7.99746 8.01769 8.31931 8.83884 9.04952 9.44083 9.70885 11.16646 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043161 B = 0.010312 C = 0.008983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.575379 B = 2714.706244 C = 3116.284455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C 0.181 3.819 4 N -0.465 5.465 5 C 0.021 3.979 6 C 0.298 3.702 7 H 0.071 0.929 8 O -0.560 6.560 9 C -0.544 4.544 10 H 0.058 0.942 11 C 0.074 3.926 12 N -0.866 5.866 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.082 4.082 18 N -0.577 5.577 19 H 0.407 0.593 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.345 0.655 26 H 0.259 0.741 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -11.041 7.852 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 C -0.082 4.082 4 N -0.187 5.187 5 C -0.108 4.108 6 C 0.239 3.761 7 H 0.088 0.912 8 O -0.362 6.362 9 C -0.582 4.582 10 H 0.077 0.923 11 C -0.130 4.130 12 N -0.503 5.503 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.213 4.213 18 N -0.182 5.182 19 H 0.243 0.757 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.189 0.811 26 H 0.069 0.931 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.092 -10.544 7.203 12.769 hybrid contribution 1.563 -0.540 -0.020 1.654 sum 1.471 -11.083 7.183 13.289 Atomic orbital electron populations 1.21666 0.93879 1.01223 1.03253 1.19799 0.96856 0.87722 1.02451 1.23295 0.96748 0.97661 0.90469 1.70115 1.24862 0.99517 1.24211 1.22584 0.96342 0.97019 0.94857 1.17723 0.91034 0.78317 0.89007 0.91202 1.86594 1.18165 1.47553 1.83839 1.21514 1.48503 0.95001 0.93178 0.92340 1.25050 0.94401 0.95079 0.98491 1.70081 1.46298 0.99559 1.34398 0.86617 0.78666 0.77441 0.85298 1.20553 1.21299 1.19974 1.22406 1.09820 0.86028 1.03015 1.43131 1.38387 1.11277 1.25442 0.75705 0.91010 0.92530 0.92967 0.89831 0.91383 0.81080 0.93125 0.81154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.87 37.16 0.37 -1.38 15 2 C -0.03 -0.37 6.56 -27.89 -0.18 -0.55 15 3 C 0.18 3.21 7.43 -155.42 -1.15 2.06 15 4 N -0.47 -10.63 11.19 -7.07 -0.08 -10.71 15 5 C 0.02 0.51 6.25 -82.85 -0.52 -0.01 15 6 C 0.30 8.12 3.38 -29.03 -0.10 8.03 15 7 H 0.07 2.11 8.14 -51.93 -0.42 1.69 15 8 O -0.56 -14.64 12.13 -35.23 -0.43 -15.07 15 9 C -0.54 -15.92 8.73 -34.44 -0.30 -16.22 15 10 H 0.06 1.75 7.74 -52.49 -0.41 1.34 15 11 C 0.07 2.17 5.40 -17.82 -0.10 2.08 15 12 N -0.87 -26.35 12.84 55.43 0.71 -25.64 15 13 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 15 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 15 17 C -0.08 -1.57 11.21 -16.56 -0.19 -1.75 15 18 N -0.58 -9.07 6.15 -10.23 -0.06 -9.13 15 19 H 0.41 4.51 8.96 -40.82 -0.37 4.15 15 20 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.08 1.03 8.14 -51.92 -0.42 0.61 15 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 15 25 H 0.35 7.91 8.78 45.56 0.40 8.31 15 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 27 H 0.17 2.83 7.82 -52.49 -0.41 2.42 15 LS Contribution 242.46 15.07 3.65 3.65 Total: -1.00 -34.27 242.46 -5.85 -40.12 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -2.45 Total: 7.33 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.17 Total: -7.75 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.57 Total: -45.48 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.43 Total: -15.07 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -34.27 -5.85 -40.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271722.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.506 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds