Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47577 * 2 1 4 4 N 1.30499 * 125.65075 * 304.97794 * 3 2 1 5 5 C 1.34126 * 109.25746 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.99216 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47066 * 65.02992 * 6 5 4 8 8 O 1.42895 * 109.47590 * 185.02847 * 6 5 4 9 9 C 1.50706 * 109.47178 * 305.03199 * 6 5 4 10 10 H 1.07998 * 119.99629 * 359.97438 * 9 6 5 11 11 C 1.37875 * 119.99955 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99932 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 119.99908 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47474 * 89.99404 * 13 11 9 15 15 H 1.48504 * 109.47121 * 209.99526 * 13 11 9 16 16 H 1.48499 * 109.47026 * 329.99368 * 13 11 9 17 17 C 1.34671 * 108.01972 * 0.26871 * 5 4 3 18 18 N 1.35045 * 125.65038 * 124.99535 * 3 2 1 19 19 H 0.96997 * 126.39740 * 0.02562 * 18 3 2 20 20 H 1.09004 * 109.47030 * 59.99823 * 1 2 3 21 21 H 1.08997 * 109.47442 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46926 * 300.00234 * 1 2 3 23 23 H 1.09008 * 109.46889 * 239.99960 * 2 1 3 24 24 H 1.08997 * 109.47284 * 120.00517 * 2 1 3 25 25 H 0.96705 * 114.00010 * 59.99939 * 8 6 5 26 26 H 0.97003 * 119.99476 * 180.02562 * 12 11 9 27 27 H 1.08002 * 126.59357 * 179.69963 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.7129 2.3405 -0.8689 5 6 2.3469 3.4811 -0.5590 6 6 2.2484 4.7821 -1.3131 7 1 1.2310 5.1668 -1.2425 8 8 3.1563 5.7301 -0.7483 9 6 2.5990 4.5516 -2.7606 10 1 2.8667 3.5620 -3.1003 11 6 2.5788 5.6042 -3.6508 12 7 2.2532 6.8093 -3.2369 13 14 3.0140 5.3186 -5.4448 14 1 1.7845 4.9769 -6.2042 15 1 3.6182 6.5519 -6.0100 16 1 3.9855 4.2001 -5.5465 17 6 3.0921 3.2581 0.5403 18 7 2.8882 1.9530 0.8990 19 1 3.2877 1.4946 1.6547 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 4.0824 5.4532 -0.7769 26 1 2.2387 7.5498 -3.8634 27 1 3.7269 3.9724 1.0436 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261271722.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = -30.662417 kcal Electronic energy + Delta-G solvation = -12185.048001 eV Core-core repulsion = 9942.421456 eV Total energy + Delta-G solvation = -2242.626545 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.85099 -37.62257 -34.51122 -34.24186 -33.39953 -30.06196 -28.36579 -25.20375 -24.27299 -21.44208 -20.90913 -18.99290 -18.64068 -16.65201 -16.26128 -16.24251 -15.22893 -15.10939 -14.86040 -14.55944 -14.13756 -13.34342 -13.06265 -12.87318 -12.80009 -12.41212 -12.07160 -11.98835 -11.38945 -10.91509 -10.76282 -10.57017 -10.26907 -9.05885 -8.09417 -6.33359 1.24518 1.39845 1.41750 1.52642 2.28590 2.38043 2.47277 3.12942 3.58947 4.11456 4.27086 4.42839 4.45155 4.52951 4.78785 4.88289 5.02023 5.17525 5.28220 5.43750 5.63098 5.71658 5.91685 6.13747 6.69638 6.81107 7.29239 7.39663 7.59026 8.94219 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043161 B = 0.010312 C = 0.008983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.575379 B = 2714.706244 C = 3116.284455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 C 0.193 3.807 4 N -0.521 5.521 5 C -0.031 4.031 6 C 0.304 3.696 7 H 0.022 0.978 8 O -0.568 6.568 9 C -0.558 4.558 10 H 0.045 0.955 11 C 0.024 3.976 12 N -0.902 5.902 13 Si 0.963 3.037 14 H -0.275 1.275 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.057 4.057 18 N -0.555 5.555 19 H 0.434 0.566 20 H 0.037 0.963 21 H 0.090 0.910 22 H 0.048 0.952 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.360 0.640 26 H 0.263 0.737 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 -13.093 8.577 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.072 4.072 4 N -0.243 5.243 5 C -0.159 4.159 6 C 0.245 3.755 7 H 0.039 0.961 8 O -0.371 6.371 9 C -0.596 4.596 10 H 0.063 0.937 11 C -0.178 4.178 12 N -0.540 5.540 13 Si 0.787 3.213 14 H -0.201 1.201 15 H -0.201 1.201 16 H -0.194 1.194 17 C -0.190 4.190 18 N -0.162 5.162 19 H 0.275 0.725 20 H 0.057 0.943 21 H 0.109 0.891 22 H 0.067 0.933 23 H 0.108 0.892 24 H 0.131 0.869 25 H 0.205 0.795 26 H 0.071 0.929 27 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.971 -12.621 7.961 14.954 hybrid contribution 1.219 0.037 -0.153 1.229 sum 2.190 -12.585 7.808 14.971 Atomic orbital electron populations 1.21640 0.93761 1.02872 1.01471 1.20085 0.96868 0.84813 1.04963 1.24133 0.95395 0.98656 0.89016 1.69974 1.26801 1.00427 1.27115 1.22022 1.00149 0.96355 0.97375 1.17213 0.88839 0.80241 0.89218 0.96082 1.86504 1.19097 1.47901 1.83596 1.21714 1.48649 0.94454 0.94802 0.93660 1.25894 0.94100 0.94676 1.03125 1.70202 1.47234 1.00425 1.36122 0.85514 0.78513 0.77735 0.79492 1.20094 1.20118 1.19393 1.22542 1.07923 0.87514 1.01046 1.43010 1.37424 1.10015 1.25718 0.72482 0.94330 0.89126 0.93253 0.89169 0.86868 0.79516 0.92856 0.78711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.87 71.98 0.71 -2.42 15 2 C -0.03 -0.63 6.56 29.85 0.20 -0.43 15 3 C 0.19 6.45 7.43 138.13 1.03 7.48 15 4 N -0.52 -24.02 11.19 -176.29 -1.97 -25.99 15 5 C -0.03 -1.47 6.25 41.39 0.26 -1.21 15 6 C 0.30 17.28 3.38 29.10 0.10 17.38 15 7 H 0.02 1.39 8.14 -2.39 -0.02 1.37 15 8 O -0.57 -30.43 12.13 -148.98 -1.81 -32.23 15 9 C -0.56 -33.71 8.73 25.60 0.22 -33.49 15 10 H 0.05 2.79 7.74 -2.91 -0.02 2.77 15 11 C 0.02 1.40 5.40 84.65 0.46 1.86 15 12 N -0.90 -56.17 12.84 21.45 0.28 -55.90 15 13 Si 0.96 46.22 29.54 68.60 2.03 48.25 15 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 15 15 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 16 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 17 C -0.06 -2.10 11.21 83.09 0.93 -1.17 15 18 N -0.56 -15.76 6.15 -186.27 -1.15 -16.91 15 19 H 0.43 7.67 8.96 -92.71 -0.83 6.84 15 20 H 0.04 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 15 23 H 0.09 1.94 8.14 -2.38 -0.02 1.92 15 24 H 0.11 1.52 8.14 -2.39 -0.02 1.51 15 25 H 0.36 16.63 8.78 -74.05 -0.65 15.98 15 26 H 0.26 15.32 8.31 -92.71 -0.77 14.55 15 27 H 0.20 6.02 7.82 -2.91 -0.02 6.00 15 Total: -1.00 -77.31 242.46 0.98 -76.32 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.29 Total: 18.46 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 3.90 Total: -12.00 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -2.84 Total: -98.80 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.81 Total: -32.23 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -77.31 0.98 -76.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271722.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.661 kcal (2) G-P(sol) polarization free energy of solvation -77.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds