Wall clock time and date at job start Mon Mar 30 2020 02:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35509 * 116.99765 * 2 1 4 4 N 1.31009 * 125.76725 * 359.97290 * 3 2 1 5 5 C 1.34364 * 109.30228 * 180.02562 * 4 3 2 6 6 C 1.34414 * 108.26534 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.54380 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47165 * 275.04251 * 7 6 5 9 9 C 1.50694 * 109.47182 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99923 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00020 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99890 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99747 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47329 * 90.00207 * 13 11 9 15 15 H 1.48504 * 109.46794 * 209.99579 * 13 11 9 16 16 H 1.48498 * 109.47252 * 329.99866 * 13 11 9 17 17 N 1.35885 * 125.76095 * 180.02562 * 3 2 1 18 18 H 0.97005 * 126.47480 * 0.23764 * 17 3 2 19 19 H 1.09000 * 109.47277 * 59.99693 * 1 2 3 20 20 H 1.08997 * 109.47520 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47234 * 300.00331 * 1 2 3 22 22 H 1.08000 * 125.86857 * 180.02562 * 5 4 3 23 23 H 1.09005 * 109.46604 * 35.04042 * 7 6 5 24 24 H 1.08991 * 109.47403 * 155.03786 * 7 6 5 25 25 H 1.08997 * 109.46679 * 299.99830 * 8 7 6 26 26 H 1.08999 * 109.47069 * 59.99296 * 8 7 6 27 27 H 0.97003 * 119.99548 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 7 1.4446 2.3723 -0.0005 5 6 2.3688 3.3475 -0.0009 6 6 3.5851 2.7753 -0.0012 7 6 4.9125 3.4888 -0.0022 8 6 5.3010 3.8412 -1.4395 9 6 6.6280 4.5552 -1.4405 10 1 7.1427 4.7396 -0.5091 11 6 7.1852 4.9731 -2.6304 12 7 8.3431 5.5967 -2.6312 13 14 6.2946 4.6547 -4.2413 14 1 5.3984 5.7988 -4.5460 15 1 7.2883 4.4998 -5.3340 16 1 5.4894 3.4124 -4.1247 17 7 3.3871 1.4144 -0.0005 18 1 4.0759 0.7314 -0.0041 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 2.1689 4.4089 -0.0009 23 1 4.8343 4.4022 0.5874 24 1 5.6738 2.8405 0.4314 25 1 5.3790 2.9277 -2.0291 26 1 4.5396 4.4895 -1.8731 27 1 8.7352 5.8903 -3.4685 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282605.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:04 Heat of formation + Delta-G solvation = -10.698311 kcal Electronic energy + Delta-G solvation = -11853.309417 eV Core-core repulsion = 9611.548580 eV Total energy + Delta-G solvation = -2241.760836 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.00650 -39.24944 -35.92486 -33.95486 -33.30829 -30.04042 -28.17397 -26.49070 -23.11772 -22.30836 -21.58867 -19.67305 -18.83130 -17.34240 -17.31120 -16.35853 -15.80773 -15.11460 -15.00742 -14.72167 -14.40979 -14.20754 -13.35167 -12.96843 -12.80666 -12.34344 -11.97161 -11.84471 -11.73471 -11.39677 -11.07622 -11.01441 -10.75359 -8.89396 -8.28801 -6.32426 1.07172 1.23054 1.36618 1.37714 1.48957 2.07125 2.35993 2.98924 3.07102 3.75624 4.14599 4.31930 4.43345 4.44903 4.64195 4.70447 4.73324 4.99012 5.06514 5.35900 5.42109 5.59596 5.63433 5.94451 6.27671 6.58871 6.75943 6.98478 7.32555 8.87533 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.063057 B = 0.007626 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.936916 B = 3670.739826 C = 3855.861078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.310 6.310 3 C 0.379 3.621 4 N -0.544 5.544 5 C -0.027 4.027 6 C -0.007 4.007 7 C -0.019 4.019 8 C -0.003 4.003 9 C -0.529 4.529 10 H 0.042 0.958 11 C 0.008 3.992 12 N -0.949 5.949 13 Si 0.946 3.054 14 H -0.266 1.266 15 H -0.285 1.285 16 H -0.255 1.255 17 N -0.556 5.556 18 H 0.432 0.568 19 H 0.056 0.944 20 H 0.137 0.863 21 H 0.059 0.941 22 H 0.186 0.814 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.012 0.988 26 H 0.020 0.980 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 -10.561 4.072 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.215 6.215 3 C 0.077 3.923 4 N -0.281 5.281 5 C -0.171 4.171 6 C -0.120 4.120 7 C -0.058 4.058 8 C -0.040 4.040 9 C -0.568 4.568 10 H 0.061 0.939 11 C -0.189 4.189 12 N -0.589 5.589 13 Si 0.770 3.230 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.179 1.179 17 N -0.172 5.172 18 H 0.272 0.728 19 H 0.074 0.926 20 H 0.155 0.845 21 H 0.078 0.922 22 H 0.203 0.797 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.907 -10.627 3.974 18.733 hybrid contribution 1.136 -0.202 -0.765 1.385 sum -13.771 -10.829 3.209 17.810 Atomic orbital electron populations 1.23195 0.73461 1.05383 1.02550 1.85850 1.25196 1.20204 1.90286 1.20630 0.81551 0.87086 1.03008 1.70448 1.33421 0.97072 1.27123 1.22134 0.87375 0.99360 1.08222 1.21437 0.98797 0.81282 1.10478 1.19887 0.88877 0.98810 0.98204 1.19490 0.94666 0.95762 0.94125 1.21462 1.04850 1.36596 0.93844 0.93942 1.25910 0.95462 0.94395 1.03114 1.70052 1.19401 1.41233 1.28255 0.85720 0.78577 0.79892 0.78788 1.19136 1.21042 1.17891 1.42661 1.06203 1.08301 1.60053 0.72817 0.92553 0.84549 0.92183 0.79697 0.89226 0.91239 0.96965 0.96133 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 10.67 113.37 1.21 2.08 15 2 O -0.31 -7.98 10.56 -88.11 -0.93 -8.91 15 3 C 0.38 11.70 8.93 179.84 1.61 13.31 15 4 N -0.54 -18.20 10.64 -314.07 -3.34 -21.55 15 5 C -0.03 -0.89 11.77 83.43 0.98 0.09 15 6 C -0.01 -0.24 6.50 40.79 0.27 0.02 15 7 C -0.02 -0.70 5.71 29.85 0.17 -0.53 15 8 C 0.00 -0.12 4.02 29.85 0.12 0.00 15 9 C -0.53 -29.60 9.66 25.60 0.25 -29.35 15 10 H 0.04 2.57 7.99 -2.91 -0.02 2.54 15 11 C 0.01 0.48 5.47 84.65 0.46 0.94 15 12 N -0.95 -58.75 13.96 21.45 0.30 -58.45 15 13 Si 0.95 44.36 27.47 68.60 1.88 46.25 15 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 15 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 16 H -0.25 -11.36 6.54 99.48 0.65 -10.71 15 17 N -0.56 -16.64 6.22 -297.42 -1.85 -18.49 15 18 H 0.43 10.57 8.96 -92.70 -0.83 9.74 15 19 H 0.06 1.06 8.14 -2.39 -0.02 1.04 15 20 H 0.14 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 15 22 H 0.19 5.45 8.06 -2.91 -0.02 5.42 15 23 H 0.09 3.17 8.14 -2.38 -0.02 3.15 15 24 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 25 H 0.01 0.55 7.20 -2.39 -0.02 0.53 15 26 H 0.02 0.92 7.57 -2.39 -0.02 0.90 15 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 15 Total: -1.00 -67.59 241.13 1.41 -66.18 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.28 Total: 8.40 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 5.06 Total: -13.43 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -4.89 Total: -98.49 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.93 Total: -8.91 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -67.59 1.41 -66.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282605.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.480 kcal (2) G-P(sol) polarization free energy of solvation -67.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds