Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99984 * 2 1 4 4 H 1.48494 * 109.47233 * 269.99937 * 3 2 1 5 5 H 1.48499 * 109.47499 * 30.00241 * 3 2 1 6 6 H 1.48508 * 109.47058 * 150.00268 * 3 2 1 7 7 C 1.37877 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00645 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99600 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46986 * 180.02562 * 9 7 2 11 11 N 1.36649 * 123.48660 * 94.99694 * 10 9 7 12 12 C 1.47008 * 107.53743 * 162.79706 * 11 10 9 13 13 C 1.51856 * 122.72816 * 168.02380 * 12 11 10 14 14 C 1.52061 * 122.67979 * 241.64803 * 12 11 10 15 15 C 1.53761 * 103.25602 * 24.81274 * 12 11 10 16 16 C 1.34715 * 123.48450 * 274.95981 * 10 9 7 17 17 O 1.21276 * 126.01344 * 1.37290 * 16 10 9 18 18 H 0.96996 * 120.00084 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47460 * 60.00013 * 9 7 2 20 20 H 1.09005 * 109.47157 * 299.99833 * 9 7 2 21 21 H 1.00903 * 111.00348 * 284.39283 * 11 10 9 22 22 H 1.09002 * 117.52953 * 219.41632 * 13 12 11 23 23 H 1.08998 * 117.52505 * 4.54826 * 13 12 11 24 24 H 1.09002 * 117.56678 * 140.57534 * 14 12 11 25 25 H 1.08994 * 117.51871 * 355.33908 * 14 12 11 26 26 H 1.09006 * 110.94436 * 95.40924 * 15 12 11 27 27 H 1.09002 * 110.94327 * 219.10408 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 7 4.3452 -3.2528 -1.1344 12 6 5.1578 -4.4093 -0.7302 13 6 5.5049 -5.5413 -1.6811 14 6 6.5997 -4.5956 -1.1758 15 6 4.7096 -4.6664 0.7180 16 6 4.1556 -3.3087 1.1203 17 8 3.8990 -2.9492 2.2497 18 1 -0.4850 0.8400 0.0004 19 1 3.8746 -0.6801 0.8911 20 1 3.8752 -0.6805 -0.8889 21 1 3.5252 -3.5472 -1.6434 22 1 5.4922 -6.5558 -1.2826 23 1 5.1920 -5.4401 -2.7203 24 1 7.3068 -4.9882 -0.4451 25 1 7.0058 -3.8719 -1.8825 26 1 3.9335 -5.4308 0.7558 27 1 5.5574 -4.9426 1.3450 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261304373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = 31.385852 kcal Electronic energy + Delta-G solvation = -12350.303028 eV Core-core repulsion = 10110.367098 eV Total energy + Delta-G solvation = -2239.935930 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.40530 -37.15945 -35.31881 -32.87688 -30.39392 -28.88152 -26.61665 -22.60429 -22.39877 -20.42547 -19.26735 -17.22968 -16.49501 -15.82843 -15.30872 -14.89118 -14.14056 -13.83124 -13.37787 -12.73699 -12.44754 -12.34744 -11.80119 -11.57460 -11.23216 -10.82924 -10.70884 -10.56375 -10.21242 -9.68594 -9.30183 -8.98251 -8.64337 -7.40834 -6.14340 -4.14968 3.14572 3.25836 3.28046 3.36891 3.38907 3.66740 4.30045 4.35567 4.42514 4.80396 5.03290 5.17940 5.34087 5.49906 5.54648 5.71000 5.82333 6.00561 6.07541 6.71919 6.81159 6.84883 7.50655 7.54644 8.37138 8.43163 8.83537 8.93250 9.44277 10.98844 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.052767 B = 0.010130 C = 0.009714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.503888 B = 2763.442806 C = 2881.783691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.241 3.759 10 N -0.443 5.443 11 N -0.408 5.408 12 C 0.008 3.992 13 C -0.159 4.159 14 C -0.144 4.144 15 C -0.148 4.148 16 C 0.498 3.502 17 O -0.526 6.526 18 H 0.266 0.734 19 H 0.044 0.956 20 H 0.040 0.960 21 H 0.341 0.659 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.426 -8.925 -4.167 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.092 0.908 9 C 0.121 3.879 10 N -0.265 5.265 11 N -0.134 5.134 12 C -0.083 4.083 13 C -0.197 4.197 14 C -0.182 4.182 15 C -0.190 4.190 16 C 0.282 3.718 17 O -0.400 6.400 18 H 0.076 0.924 19 H 0.061 0.939 20 H 0.058 0.942 21 H 0.163 0.837 22 H 0.120 0.880 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.596 -8.050 -3.730 14.601 hybrid contribution -0.471 0.203 0.194 0.548 sum 11.126 -7.847 -3.535 14.066 Atomic orbital electron populations 1.69890 1.06238 1.27213 1.49854 1.24822 0.94806 0.99025 0.94129 0.86822 0.80509 0.83534 0.78759 1.19809 1.20809 1.18789 1.21337 0.89081 0.95073 1.52381 0.90841 1.19691 0.95267 0.74787 0.98112 1.48025 1.64095 1.13653 1.00771 1.62221 1.20918 1.20850 1.09361 1.21664 0.99002 0.93787 0.93881 1.23024 1.02744 0.94577 0.99362 1.23022 0.90412 1.01607 1.03183 1.22337 1.03031 0.98025 0.95558 1.21053 0.78936 0.86395 0.85366 1.90696 1.52816 1.75781 1.20743 0.92379 0.93863 0.94171 0.83741 0.87990 0.87766 0.88236 0.87712 0.87811 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.96 55.43 0.77 -26.79 15 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 15 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 15 7 C -0.54 -15.69 9.93 -34.44 -0.34 -16.04 15 8 H 0.07 2.34 8.06 -52.49 -0.42 1.91 15 9 C 0.24 6.05 4.88 -5.19 -0.03 6.03 15 10 N -0.44 -9.78 3.35 -60.98 -0.20 -9.98 15 11 N -0.41 -7.25 7.75 0.26 0.00 -7.24 15 12 C 0.01 0.12 3.05 -132.21 -0.40 -0.29 15 13 C -0.16 -1.57 10.42 -27.19 -0.28 -1.85 15 14 C -0.14 -1.57 10.44 -27.09 -0.28 -1.85 15 15 C -0.15 -2.26 6.93 -26.82 -0.19 -2.45 15 16 C 0.50 10.90 8.17 -10.34 -0.08 10.81 15 17 O -0.53 -13.63 17.70 5.56 0.10 -13.54 15 18 H 0.27 7.63 8.31 -40.82 -0.34 7.29 15 19 H 0.04 1.14 7.10 -51.93 -0.37 0.77 15 20 H 0.04 0.96 7.57 -51.93 -0.39 0.57 15 21 H 0.34 5.84 9.03 -181.33 -1.64 4.21 15 22 H 0.10 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.10 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.10 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.10 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 27 H 0.10 1.36 8.14 -51.93 -0.42 0.94 15 LS Contribution 239.18 15.07 3.60 3.60 Total: -1.00 -33.57 239.18 -6.62 -40.19 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.52 Total: 0.51 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.70 Total: -3.53 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.57 Total: -44.02 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.10 Total: -13.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.57 -6.62 -40.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261304373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.577 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds