Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99984 * 2 1 4 4 H 1.48494 * 109.47233 * 269.99937 * 3 2 1 5 5 H 1.48499 * 109.47499 * 30.00241 * 3 2 1 6 6 H 1.48508 * 109.47058 * 150.00268 * 3 2 1 7 7 C 1.37877 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00645 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99600 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46986 * 180.02562 * 9 7 2 11 11 N 1.36649 * 123.48660 * 94.99694 * 10 9 7 12 12 C 1.47008 * 107.53743 * 162.79706 * 11 10 9 13 13 C 1.51856 * 122.72816 * 168.02380 * 12 11 10 14 14 C 1.52061 * 122.67979 * 241.64803 * 12 11 10 15 15 C 1.53761 * 103.25602 * 24.81274 * 12 11 10 16 16 C 1.34715 * 123.48450 * 274.95981 * 10 9 7 17 17 O 1.21276 * 126.01344 * 1.37290 * 16 10 9 18 18 H 0.96996 * 120.00084 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47460 * 60.00013 * 9 7 2 20 20 H 1.09005 * 109.47157 * 299.99833 * 9 7 2 21 21 H 1.00903 * 111.00348 * 284.39283 * 11 10 9 22 22 H 1.09002 * 117.52953 * 219.41632 * 13 12 11 23 23 H 1.08998 * 117.52505 * 4.54826 * 13 12 11 24 24 H 1.09002 * 117.56678 * 140.57534 * 14 12 11 25 25 H 1.08994 * 117.51871 * 355.33908 * 14 12 11 26 26 H 1.09006 * 110.94436 * 95.40924 * 15 12 11 27 27 H 1.09002 * 110.94327 * 219.10408 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 7 4.3452 -3.2528 -1.1344 12 6 5.1578 -4.4093 -0.7302 13 6 5.5049 -5.5413 -1.6811 14 6 6.5997 -4.5956 -1.1758 15 6 4.7096 -4.6664 0.7180 16 6 4.1556 -3.3087 1.1203 17 8 3.8990 -2.9492 2.2497 18 1 -0.4850 0.8400 0.0004 19 1 3.8746 -0.6801 0.8911 20 1 3.8752 -0.6805 -0.8889 21 1 3.5252 -3.5472 -1.6434 22 1 5.4922 -6.5558 -1.2826 23 1 5.1920 -5.4401 -2.7203 24 1 7.3068 -4.9882 -0.4451 25 1 7.0058 -3.8719 -1.8825 26 1 3.9335 -5.4308 0.7558 27 1 5.5574 -4.9426 1.3450 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261304373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = 5.897981 kcal Electronic energy + Delta-G solvation = -12351.408265 eV Core-core repulsion = 10110.367098 eV Total energy + Delta-G solvation = -2241.041167 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.85782 -38.63812 -36.82125 -34.98210 -32.16481 -30.30839 -28.41084 -24.43435 -23.35538 -21.73624 -20.80108 -19.28768 -18.20447 -17.44277 -16.67580 -16.27878 -15.92609 -15.27229 -14.99436 -14.49368 -14.06510 -13.80739 -13.62314 -13.17993 -12.55759 -12.34049 -12.28427 -11.91074 -11.74465 -11.63496 -10.89181 -10.72908 -10.63211 -9.04270 -8.40356 -6.48492 1.32364 1.35740 1.46374 1.48221 1.78976 2.27879 2.75259 2.91796 3.06506 3.37211 3.66075 4.00773 4.22638 4.54277 4.59695 4.69933 4.76997 4.83368 4.89723 5.07599 5.23119 5.32520 5.38854 5.93606 6.18567 6.51156 6.78865 7.11380 7.27715 8.76566 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.052767 B = 0.010130 C = 0.009714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.503888 B = 2763.442806 C = 2881.783691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.250 1.250 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.552 4.552 8 H 0.026 0.974 9 C 0.248 3.752 10 N -0.453 5.453 11 N -0.412 5.412 12 C -0.025 4.025 13 C -0.126 4.126 14 C -0.134 4.134 15 C -0.128 4.128 16 C 0.475 3.525 17 O -0.582 6.582 18 H 0.272 0.728 19 H 0.029 0.971 20 H 0.058 0.942 21 H 0.340 0.660 22 H 0.129 0.871 23 H 0.113 0.887 24 H 0.121 0.879 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 -9.595 -5.349 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.174 1.174 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.590 4.590 8 H 0.045 0.955 9 C 0.128 3.872 10 N -0.273 5.273 11 N -0.137 5.137 12 C -0.116 4.116 13 C -0.164 4.164 14 C -0.171 4.171 15 C -0.169 4.169 16 C 0.263 3.737 17 O -0.461 6.461 18 H 0.081 0.919 19 H 0.047 0.953 20 H 0.076 0.924 21 H 0.160 0.840 22 H 0.147 0.853 23 H 0.132 0.868 24 H 0.139 0.861 25 H 0.122 0.878 26 H 0.137 0.863 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.989 -8.760 -4.946 17.231 hybrid contribution -1.240 0.297 0.530 1.381 sum 12.749 -8.463 -4.417 15.927 Atomic orbital electron populations 1.70038 1.08269 1.28721 1.50972 1.25856 0.95745 1.03474 0.93235 0.85641 0.79126 0.77723 0.80067 1.17376 1.20282 1.17729 1.21515 0.91249 0.93554 1.52710 0.95543 1.19335 0.92587 0.77339 0.97988 1.48003 1.63463 1.13161 1.02661 1.62286 1.20929 1.22908 1.07549 1.21952 1.01058 0.94730 0.93880 1.23223 0.99820 0.94524 0.98832 1.23210 0.89237 1.01507 1.03190 1.22302 1.03987 0.93765 0.96878 1.22299 0.78151 0.88786 0.84488 1.90640 1.55123 1.77511 1.22795 0.91914 0.95327 0.92424 0.83951 0.85266 0.86822 0.86079 0.87806 0.86299 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.96 21.45 0.30 -59.36 15 2 C 0.02 0.94 5.47 84.65 0.46 1.41 15 3 Si 0.95 44.37 27.47 68.60 1.88 46.26 15 4 H -0.25 -10.69 7.11 99.48 0.71 -9.98 15 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 6 H -0.25 -11.31 6.54 99.48 0.65 -10.66 15 7 C -0.55 -33.27 9.93 25.60 0.25 -33.01 15 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 15 9 C 0.25 12.67 4.88 85.63 0.42 13.09 15 10 N -0.45 -20.17 3.35 -465.28 -1.56 -21.73 15 11 N -0.41 -14.20 7.75 -153.09 -1.19 -15.38 15 12 C -0.03 -0.63 3.05 3.08 0.01 -0.62 15 13 C -0.13 -1.90 10.42 30.30 0.32 -1.59 15 14 C -0.13 -2.34 10.44 30.36 0.32 -2.03 15 15 C -0.13 -3.66 6.93 30.54 0.21 -3.45 15 16 C 0.48 21.03 8.17 88.10 0.72 21.75 15 17 O -0.58 -31.24 17.70 -3.02 -0.05 -31.29 15 18 H 0.27 15.89 8.31 -92.71 -0.77 15.12 15 19 H 0.03 1.54 7.10 -2.39 -0.02 1.52 15 20 H 0.06 2.71 7.57 -2.38 -0.02 2.70 15 21 H 0.34 11.53 9.03 -210.52 -1.90 9.63 15 22 H 0.13 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.11 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.12 1.63 8.14 -2.39 -0.02 1.61 15 25 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.12 3.01 8.14 -2.38 -0.02 2.99 15 27 H 0.13 3.00 8.14 -2.39 -0.02 2.98 15 Total: -1.00 -76.80 239.18 1.31 -75.49 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -0.78 Total: 10.46 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 2.71 Total: -4.45 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -2.44 Total: -96.47 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.05 Total: -31.29 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -76.80 1.31 -75.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261304373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.388 kcal (2) G-P(sol) polarization free energy of solvation -76.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds