Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35807 * 116.99759 * 2 1 4 4 C 1.39332 * 126.33180 * 269.68703 * 3 2 1 5 5 C 1.50699 * 125.45975 * 359.97438 * 4 3 2 6 6 N 1.31049 * 109.08492 * 179.81407 * 4 3 2 7 7 N 1.39982 * 109.33242 * 0.45643 * 6 4 3 8 8 C 1.46498 * 126.15762 * 179.73935 * 7 6 4 9 9 C 1.37747 * 107.69520 * 359.71222 * 7 6 4 10 10 C 1.39947 * 126.72619 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99617 * 28.99125 * 10 9 7 12 12 C 1.40127 * 120.00007 * 208.98410 * 10 9 7 13 13 N 1.30842 * 120.00096 * 18.33844 * 12 10 9 14 14 Si 1.86800 * 119.99921 * 198.33456 * 12 10 9 15 15 H 1.48496 * 109.47238 * 60.00207 * 14 12 10 16 16 H 1.48500 * 109.47116 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46943 * 300.00102 * 14 12 10 18 18 H 1.08998 * 109.47538 * 299.99763 * 1 2 3 19 19 H 1.08997 * 109.47367 * 59.99894 * 1 2 3 20 20 H 1.09005 * 109.46824 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47425 * 89.99221 * 5 4 3 22 22 H 1.08998 * 109.47673 * 210.00027 * 5 4 3 23 23 H 1.09001 * 109.46592 * 329.99651 * 5 4 3 24 24 H 1.09003 * 109.46752 * 264.74271 * 8 7 6 25 25 H 1.09003 * 109.46977 * 24.73303 * 8 7 6 26 26 H 1.08999 * 109.47696 * 144.74363 * 8 7 6 27 27 H 0.96991 * 120.00374 * 184.86992 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 2.4257 1.9428 -1.1224 5 6 2.2194 1.5194 -2.5539 6 7 2.9884 3.0608 -0.7339 7 7 3.0116 3.1062 0.6650 8 6 3.5620 4.1877 1.4857 9 6 2.4231 1.9513 1.1312 10 6 2.2385 1.5876 2.4699 11 1 2.1188 2.3504 3.2250 12 6 2.2086 0.2339 2.8305 13 7 2.6983 -0.6698 2.0208 14 14 1.4699 -0.2807 4.4672 15 1 0.0456 0.1362 4.5203 16 1 1.5599 -1.7561 4.6090 17 1 2.2174 0.3690 5.5737 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.2538 1.8834 -2.9050 22 1 3.0124 1.9369 -3.1743 23 1 2.2427 0.4316 -2.6180 24 1 4.5867 3.9447 1.7671 25 1 3.5525 5.1170 0.9160 26 1 2.9567 4.3060 2.3844 27 1 2.6145 -1.6115 2.2373 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261305757.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = 28.709029 kcal Electronic energy + Delta-G solvation = -12749.365654 eV Core-core repulsion = 10509.313649 eV Total energy + Delta-G solvation = -2240.052006 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.11660 -35.90517 -33.59687 -32.14986 -28.90198 -28.18728 -26.13076 -24.49814 -23.48584 -19.76807 -18.30173 -16.94312 -15.58585 -14.98770 -14.35525 -14.01020 -13.42098 -13.33788 -12.57718 -12.46333 -12.18939 -11.84858 -11.44403 -11.36687 -11.20922 -10.89912 -10.56352 -10.31623 -10.20672 -9.42283 -8.96626 -8.08003 -7.59146 -6.69742 -6.54632 -4.39869 2.98692 3.10873 3.12327 3.55502 3.91173 4.04036 4.18823 5.12226 5.59744 5.89128 6.14419 6.18623 6.21280 6.27610 6.38101 6.42111 6.57533 6.64782 6.70844 7.13400 7.34178 7.50117 7.78682 8.13277 8.38101 8.78241 8.97073 9.50710 9.58962 10.31978 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.016750 C = 0.012427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.952425 B = 1671.275933 C = 2252.671480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.260 6.260 3 C -0.160 4.160 4 C 0.066 3.934 5 C -0.058 4.058 6 N -0.380 5.380 7 N -0.432 5.432 8 C 0.136 3.864 9 C 0.269 3.731 10 C -0.474 4.474 11 H 0.076 0.924 12 C 0.091 3.909 13 N -0.736 5.736 14 Si 0.904 3.096 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.267 1.267 18 H 0.026 0.974 19 H 0.016 0.984 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 1.142 0.207 2.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.173 6.173 3 C -0.216 4.216 4 C -0.097 4.097 5 C -0.117 4.117 6 N -0.204 5.204 7 N -0.221 5.221 8 C -0.007 4.007 9 C 0.149 3.851 10 C -0.510 4.510 11 H 0.094 0.906 12 C -0.134 4.134 13 N -0.359 5.359 14 Si 0.728 3.272 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.192 1.192 18 H 0.045 0.955 19 H 0.034 0.966 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.627 1.887 -0.184 2.499 hybrid contribution -0.971 -0.789 1.174 1.716 sum -2.598 1.098 0.991 2.989 Atomic orbital electron populations 1.22794 0.86555 0.99400 0.98193 1.86255 1.14357 1.23475 1.93169 1.17870 1.19391 0.94895 0.89463 1.21901 0.99224 0.92995 0.95556 1.19932 1.00392 1.00882 0.90523 1.76704 1.31459 1.21959 0.90305 1.48225 1.52118 1.18278 1.03517 1.21169 0.97869 0.88236 0.93428 1.18735 0.88856 0.83568 0.93924 1.18313 1.48782 0.92650 0.91223 0.90583 1.25633 0.93208 0.96019 0.98568 1.69823 1.28511 1.02335 1.35200 0.86457 0.80535 0.77984 0.82237 1.19023 1.20221 1.19180 0.95485 0.96573 0.92041 0.92594 0.92601 0.91421 0.93224 0.91810 0.91467 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.13 101.05 1.12 1.73 15 2 O -0.26 -6.88 8.01 -19.14 -0.15 -7.03 15 3 C -0.16 -4.41 5.73 -38.36 -0.22 -4.62 15 4 C 0.07 1.70 7.16 -82.52 -0.59 1.11 15 5 C -0.06 -1.19 10.41 36.01 0.37 -0.81 15 6 N -0.38 -10.01 12.51 33.60 0.42 -9.59 15 7 N -0.43 -11.18 4.10 -65.21 -0.27 -11.45 15 8 C 0.14 2.72 11.25 59.85 0.67 3.40 15 9 C 0.27 7.48 6.47 -83.75 -0.54 6.94 15 10 C -0.47 -12.66 8.91 -38.23 -0.34 -13.00 15 11 H 0.08 1.91 7.54 -52.49 -0.40 1.51 15 12 C 0.09 2.32 5.09 -17.26 -0.09 2.23 15 13 N -0.74 -19.69 10.77 55.56 0.60 -19.09 15 14 Si 0.90 18.77 29.60 -169.99 -5.03 13.74 15 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 17 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 18 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 15 20 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.05 1.04 8.14 -51.93 -0.42 0.61 15 23 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 26 H 0.07 1.23 7.67 -51.93 -0.40 0.84 15 27 H 0.28 6.92 8.30 -40.82 -0.34 6.58 15 LS Contribution 241.11 15.07 3.63 3.63 Total: -1.00 -31.32 241.11 -3.72 -35.03 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -3.31 Total: -2.20 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 0.39 Total: -3.04 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.75 Total: -40.13 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.15 Total: -7.03 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.32 -3.72 -35.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261305757.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.744 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds