Wall clock time and date at job start Mon Mar 30 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33067 * 126.01198 * 2 1 4 4 C 1.32815 * 108.64729 * 180.22941 * 3 2 1 5 5 C 1.39803 * 125.79526 * 179.74700 * 4 3 2 6 6 H 1.08000 * 119.99902 * 180.02562 * 5 4 3 7 7 C 1.40341 * 119.99870 * 0.03070 * 5 4 3 8 8 N 1.30630 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47469 * 89.99786 * 9 7 5 11 11 H 1.48508 * 109.47023 * 209.99656 * 9 7 5 12 12 H 1.48502 * 109.47278 * 329.99565 * 9 7 5 13 13 O 1.34943 * 108.40591 * 359.77092 * 4 3 2 14 14 C 1.34600 * 107.60644 * 359.97438 * 13 4 3 15 15 C 1.50703 * 126.31853 * 179.97438 * 14 13 4 16 16 H 1.09002 * 109.47152 * 165.02133 * 15 14 13 17 17 C 1.53000 * 109.46912 * 285.02361 * 15 14 13 18 18 N 1.46896 * 109.46997 * 45.02071 * 15 14 13 19 19 H 1.08999 * 109.46837 * 270.16647 * 1 2 3 20 20 H 1.09004 * 109.46975 * 30.16420 * 1 2 3 21 21 H 1.08996 * 109.47084 * 150.16583 * 1 2 3 22 22 H 0.96996 * 119.99573 * 180.02562 * 8 7 5 23 23 H 1.09004 * 109.46724 * 180.02562 * 17 15 14 24 24 H 1.09001 * 109.47194 * 299.99742 * 17 15 14 25 25 H 1.08992 * 109.47399 * 59.99914 * 17 15 14 26 26 H 1.00900 * 111.00550 * 300.00040 * 18 15 14 27 27 H 1.00896 * 111.00310 * 63.95626 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2894 1.0764 0.0000 4 6 3.5570 0.6800 -0.0050 5 6 4.6758 1.5182 -0.0117 6 1 5.6688 1.0934 -0.0158 7 6 4.5087 2.9116 -0.0129 8 7 3.3076 3.4254 -0.0083 9 14 6.0036 4.0316 -0.0225 10 1 6.3924 4.3264 -1.4251 11 1 5.6764 5.2999 0.6774 12 1 7.1305 3.3591 0.6727 13 8 3.5815 -0.6692 -0.0032 14 6 2.3062 -1.0996 0.0037 15 6 1.8488 -2.5355 0.0075 16 1 0.7939 -2.5801 0.2784 17 6 2.0433 -3.1364 -1.3861 18 7 2.6378 -3.2982 0.9840 19 1 -0.3633 0.0030 1.0277 20 1 -0.3633 0.8885 -0.5164 21 1 -0.3633 -0.8914 -0.5112 22 1 3.1922 4.3884 -0.0094 23 1 1.7120 -4.1748 -1.3834 24 1 1.4578 -2.5705 -2.1107 25 1 3.0980 -3.0918 -1.6570 26 1 3.6201 -3.2722 0.7547 27 1 2.4764 -2.9616 1.9213 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261314827.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:37 Heat of formation + Delta-G solvation = -3.647559 kcal Electronic energy + Delta-G solvation = -12378.344567 eV Core-core repulsion = 10136.889474 eV Total energy + Delta-G solvation = -2241.455093 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.05409 -35.34834 -33.77892 -33.13965 -29.74156 -28.36489 -27.36545 -24.97526 -21.68735 -20.06754 -18.95998 -17.38873 -15.48046 -15.40512 -14.96362 -14.64766 -13.70119 -13.51991 -12.91099 -12.35394 -11.99744 -11.78308 -11.56394 -11.50155 -11.31571 -11.00202 -10.75135 -10.57448 -10.35196 -9.63701 -8.93575 -8.70868 -7.95699 -7.23957 -6.69052 -4.61921 2.86464 3.03831 3.08264 3.24211 3.83753 4.34122 4.60096 5.20971 5.31978 5.57617 5.84455 5.86133 6.04306 6.09086 6.36222 6.40756 6.50885 6.59615 6.64447 6.93149 7.14336 7.48944 7.75905 7.85345 8.00162 8.15456 8.53315 8.77761 9.99094 10.24456 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.054553 B = 0.010470 C = 0.009310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.141134 B = 2673.776591 C = 3006.793621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.025 3.975 3 N -0.534 5.534 4 C 0.333 3.667 5 C -0.438 4.438 6 H 0.090 0.910 7 C 0.076 3.924 8 N -0.727 5.727 9 Si 0.926 3.074 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.260 1.260 13 O -0.244 6.244 14 C -0.242 4.242 15 C 0.199 3.801 16 H 0.087 0.913 17 C -0.138 4.138 18 N -0.843 5.843 19 H 0.056 0.944 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.278 0.722 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.340 0.660 27 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 -4.499 -0.080 4.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 N -0.265 5.265 4 C 0.149 3.851 5 C -0.473 4.473 6 H 0.108 0.892 7 C -0.149 4.149 8 N -0.352 5.352 9 Si 0.750 3.250 10 H -0.192 1.192 11 H -0.199 1.199 12 H -0.184 1.184 13 O -0.141 6.141 14 C -0.298 4.298 15 C 0.087 3.913 16 H 0.105 0.895 17 C -0.196 4.196 18 N -0.370 5.370 19 H 0.075 0.925 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.152 0.848 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.860 -4.327 -0.327 4.721 hybrid contribution 1.284 0.870 0.172 1.561 sum -0.575 -3.457 -0.156 3.508 Atomic orbital electron populations 1.19930 0.89876 1.01251 1.00910 1.21577 0.96263 0.90052 1.02324 1.71364 0.99369 1.26320 1.29452 1.22262 0.93649 0.76284 0.92939 1.18124 0.91028 0.89374 1.48756 0.89165 1.25854 0.97551 0.98198 0.93334 1.70002 1.22445 1.13325 1.29396 0.86025 0.80802 0.78871 0.79328 1.19218 1.19926 1.18409 1.84328 1.28422 1.25235 1.76085 1.23235 0.82615 0.96904 1.27026 1.19453 0.96632 0.82829 0.92368 0.89481 1.21806 1.01939 0.99809 0.96088 1.59158 1.13105 1.58859 1.05850 0.92483 0.91810 0.92635 0.91066 0.92560 0.92472 0.92940 0.84803 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 10.00 36.01 0.36 -0.87 15 2 C 0.03 0.64 7.10 -82.88 -0.59 0.05 15 3 N -0.53 -15.64 9.43 -9.64 -0.09 -15.73 15 4 C 0.33 9.71 7.74 -16.54 -0.13 9.59 15 5 C -0.44 -12.19 9.45 -38.21 -0.36 -12.55 15 6 H 0.09 2.34 7.85 -52.49 -0.41 1.93 15 7 C 0.08 1.97 5.50 -17.27 -0.10 1.88 15 8 N -0.73 -19.98 11.88 55.57 0.66 -19.32 15 9 Si 0.93 18.77 29.56 -169.99 -5.03 13.75 15 10 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 11 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 12 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 13 O -0.24 -6.57 10.80 3.10 0.03 -6.53 15 14 C -0.24 -5.72 6.21 -35.13 -0.22 -5.94 15 15 C 0.20 3.68 3.67 -68.87 -0.25 3.42 15 16 H 0.09 1.49 7.19 -51.93 -0.37 1.12 15 17 C -0.14 -2.32 9.47 37.16 0.35 -1.96 15 18 N -0.84 -14.28 9.22 -5.65 -0.05 -14.33 15 19 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 21 H 0.05 0.92 7.46 -51.93 -0.39 0.54 15 22 H 0.28 6.84 8.29 -40.82 -0.34 6.51 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.34 5.89 8.97 -39.29 -0.35 5.54 15 27 H 0.34 5.55 9.06 -39.29 -0.36 5.19 15 LS Contribution 240.90 15.07 3.63 3.63 Total: -1.00 -30.97 240.90 -4.91 -35.87 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -3.13 Total: 9.05 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -0.93 Total: -6.39 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.52 Total: -49.38 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: 0.03 Total: -6.53 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.97 -4.91 -35.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314827.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.224 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds