Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.46528 * 2 1 4 4 O 1.42897 * 109.47325 * 240.00538 * 2 1 3 5 5 C 1.52997 * 109.47641 * 119.99617 * 2 1 3 6 6 N 1.46491 * 109.47412 * 185.00129 * 5 2 1 7 7 C 1.36423 * 126.55932 * 265.17756 * 6 5 2 8 8 C 1.36215 * 107.19350 * 180.23885 * 7 6 5 9 9 N 1.32759 * 108.62355 * 359.75536 * 8 7 6 10 10 C 1.32991 * 109.22265 * 359.97438 * 9 8 7 11 11 C 1.39989 * 125.96384 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00308 * 180.02562 * 11 10 9 13 13 C 1.40239 * 119.99695 * 359.74944 * 11 10 9 14 14 N 1.30684 * 120.00322 * 0.27882 * 13 11 10 15 15 Si 1.86803 * 119.99747 * 180.27707 * 13 11 10 16 16 H 1.48506 * 109.47253 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47428 * 120.00278 * 15 13 11 18 18 H 1.48506 * 109.46902 * 240.00354 * 15 13 11 19 19 H 1.08996 * 109.47163 * 299.99875 * 1 2 3 20 20 H 1.08996 * 109.47472 * 60.00332 * 1 2 3 21 21 H 1.09001 * 109.46622 * 180.02562 * 1 2 3 22 22 H 0.96701 * 113.99722 * 299.99204 * 4 2 1 23 23 H 1.09002 * 109.46498 * 65.00413 * 5 2 1 24 24 H 1.08997 * 109.47160 * 305.00992 * 5 2 1 25 25 H 1.08003 * 126.39961 * 359.96636 * 7 6 5 26 26 H 1.08002 * 125.68644 * 179.77531 * 8 7 6 27 27 H 0.97005 * 120.00035 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0401 -0.7211 1.2492 6 7 3.5001 -0.6177 1.3109 7 6 4.3998 -1.5349 0.8522 8 6 5.6435 -1.0449 1.1143 9 7 5.5175 0.1354 1.7088 10 6 4.2259 0.4246 1.8389 11 6 3.6973 1.5841 2.4184 12 1 2.6274 1.7203 2.4744 13 6 4.5570 2.5661 2.9315 14 7 5.8517 2.4013 2.8637 15 14 3.8516 4.1097 3.7118 16 1 2.3683 4.0550 3.6642 17 1 4.2991 4.1990 5.1249 18 1 4.3265 5.3028 2.9659 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.7211 -1.5951 -1.2329 23 1 1.7518 -1.7714 1.2055 24 1 1.6054 -0.2617 2.1369 25 1 4.1690 -2.4758 0.3749 26 1 6.5764 -1.5348 0.8776 27 1 6.4463 3.0807 3.2182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306342998.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = 1.049134 kcal Electronic energy + Delta-G solvation = -12466.424816 eV Core-core repulsion = 10225.173388 eV Total energy + Delta-G solvation = -2241.251429 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.84315 -37.18606 -33.26045 -32.54599 -30.20539 -28.53131 -25.72965 -24.63011 -21.54744 -19.79087 -19.27493 -16.98936 -15.88205 -15.41232 -15.25102 -14.48241 -14.20613 -12.98764 -12.74103 -12.48576 -12.30565 -12.03228 -11.67345 -11.32444 -11.15996 -11.02561 -10.62815 -10.36178 -10.04792 -9.92246 -9.15297 -7.81659 -7.67440 -6.94968 -6.32606 -4.19557 3.07226 3.18430 3.21699 3.73997 4.05430 4.36209 4.72353 4.81735 5.12121 5.37076 5.40388 5.56512 5.74538 5.87700 6.02944 6.16385 6.38565 6.45923 6.66259 7.21829 7.36820 7.69964 7.94155 8.18073 8.29829 8.67626 9.04613 9.41836 10.35149 10.61265 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.032994 B = 0.014008 C = 0.010442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.430345 B = 1998.395340 C = 2680.905973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.108 0.892 4 O -0.553 6.553 5 C 0.099 3.901 6 N -0.500 5.500 7 C -0.164 4.164 8 C -0.022 4.022 9 N -0.517 5.517 10 C 0.373 3.627 11 C -0.465 4.465 12 H 0.075 0.925 13 C 0.082 3.918 14 N -0.744 5.744 15 Si 0.907 3.093 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.275 1.275 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.054 0.946 22 H 0.363 0.637 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 -3.153 -2.202 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.024 3.976 3 H 0.126 0.874 4 O -0.356 6.356 5 C -0.026 4.026 6 N -0.190 5.190 7 C -0.294 4.294 8 C -0.174 4.174 9 N -0.238 5.238 10 C 0.130 3.870 11 C -0.504 4.504 12 H 0.093 0.907 13 C -0.141 4.141 14 N -0.369 5.369 15 Si 0.732 3.268 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.201 1.201 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.209 0.791 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.231 -2.064 -2.033 8.726 hybrid contribution -1.289 -0.501 0.170 1.393 sum -9.520 -2.565 -1.863 10.034 Atomic orbital electron populations 1.22449 0.96528 1.02043 1.02839 1.22434 0.92045 0.98183 0.84920 0.87397 1.86687 1.77363 1.27950 1.43631 1.21970 0.81684 1.00085 0.98875 1.45274 1.03735 1.18591 1.51408 1.21737 0.90650 0.98703 1.18330 1.22097 0.94815 0.96172 1.04348 1.71267 1.14797 1.13393 1.24379 1.20279 0.85069 0.87988 0.93706 1.18081 0.93659 1.00383 1.38324 0.90684 1.25680 0.94484 0.98962 0.95007 1.70031 1.02850 1.31735 1.32271 0.86300 0.79899 0.81472 0.79121 1.18849 1.20083 1.20060 0.91362 0.91843 0.92657 0.79096 0.91444 0.89749 0.85108 0.85093 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.54 37.16 0.35 -1.86 15 2 C 0.08 1.41 3.83 -26.73 -0.10 1.31 15 3 H 0.11 2.15 8.14 -51.92 -0.42 1.73 15 4 O -0.55 -9.58 13.29 -35.23 -0.47 -10.05 15 5 C 0.10 1.82 5.48 -4.05 -0.02 1.80 15 6 N -0.50 -12.10 2.76 -115.98 -0.32 -12.42 15 7 C -0.16 -3.93 11.60 -16.24 -0.19 -4.12 15 8 C -0.02 -0.58 11.85 -17.88 -0.21 -0.80 15 9 N -0.52 -15.66 9.41 -12.72 -0.12 -15.78 15 10 C 0.37 10.66 7.43 -155.59 -1.16 9.50 15 11 C -0.46 -12.82 9.02 -38.17 -0.34 -13.17 15 12 H 0.08 1.89 7.29 -52.49 -0.38 1.51 15 13 C 0.08 2.20 5.50 -17.29 -0.10 2.11 15 14 N -0.74 -21.41 11.90 55.56 0.66 -20.75 15 15 Si 0.91 19.46 29.56 -169.99 -5.03 14.43 15 16 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 19 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.36 4.65 9.05 45.56 0.41 5.06 15 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.08 1.51 7.61 -51.93 -0.39 1.11 15 25 H 0.13 2.66 8.06 -52.48 -0.42 2.23 15 26 H 0.13 3.08 8.06 -52.49 -0.42 2.65 15 27 H 0.27 7.05 8.29 -40.82 -0.34 6.71 15 LS Contribution 241.53 15.07 3.64 3.64 Total: -1.00 -33.72 241.53 -5.86 -39.58 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -2.46 Total: 6.57 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.77 Total: -5.22 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.22 Total: -48.95 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.47 Total: -10.05 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.72 -5.86 -39.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342998.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.626 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds