Wall clock time and date at job start Mon Mar 30 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34093 * 126.09798 * 2 1 4 4 O 1.35115 * 107.27391 * 179.78064 * 3 2 1 5 5 C 1.34208 * 107.75094 * 0.38446 * 4 3 2 6 6 N 1.38155 * 125.71173 * 179.87079 * 5 4 3 7 7 C 1.46507 * 119.99633 * 179.69055 * 6 5 4 8 8 C 1.46493 * 120.00301 * 359.69660 * 6 5 4 9 9 C 1.50706 * 109.47128 * 269.99635 * 8 6 5 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00436 * 179.72498 * 9 8 6 12 12 N 1.31514 * 120.00481 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99745 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00365 * 13 11 9 15 15 H 1.48506 * 109.47294 * 210.00213 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00116 * 13 11 9 17 17 N 1.31051 * 108.57222 * 359.60810 * 5 4 3 18 18 H 1.09000 * 109.47132 * 270.00043 * 1 2 3 19 19 H 1.08998 * 109.47393 * 29.99897 * 1 2 3 20 20 H 1.09002 * 109.46639 * 150.00403 * 1 2 3 21 21 H 1.08001 * 126.36502 * 0.04120 * 3 2 1 22 22 H 1.09004 * 109.47155 * 270.00229 * 7 6 5 23 23 H 1.08993 * 109.47381 * 30.00388 * 7 6 5 24 24 H 1.09002 * 109.46817 * 150.00626 * 7 6 5 25 25 H 1.09001 * 109.47786 * 149.99908 * 8 6 5 26 26 H 1.08998 * 109.47558 * 29.99771 * 8 6 5 27 27 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2971 1.0835 0.0000 4 8 3.5759 0.6475 0.0049 5 6 3.5508 -0.6943 -0.0007 6 7 4.6573 -1.5216 -0.0008 7 6 4.4842 -2.9764 -0.0005 8 6 6.0037 -0.9442 -0.0011 9 6 6.4651 -0.7464 -1.4220 10 1 5.8201 -1.0236 -2.2427 11 6 7.7086 -0.2069 -1.6743 12 7 8.1111 -0.0339 -2.9144 13 14 8.8211 0.2796 -0.2548 14 1 9.6737 -0.8757 0.1243 15 1 9.6828 1.4162 -0.6682 16 1 7.9912 0.6850 0.9080 17 7 2.3010 -1.0884 -0.0004 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3633 -0.8901 -0.5138 21 1 1.9716 2.1133 0.0006 22 1 4.4414 -3.3370 1.0273 23 1 3.5575 -3.2321 -0.5141 24 1 5.3249 -3.4424 -0.5143 25 1 6.6885 -1.6188 0.5127 26 1 5.9869 0.0170 0.5126 27 1 8.9857 0.3460 -3.0918 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306371908.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:55 Heat of formation + Delta-G solvation = 33.564240 kcal Electronic energy + Delta-G solvation = -12237.071205 eV Core-core repulsion = 9997.229737 eV Total energy + Delta-G solvation = -2239.841468 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.37484 -36.32555 -34.39024 -32.65705 -30.55195 -28.41140 -27.08032 -25.08028 -22.57440 -20.66960 -19.77218 -17.08385 -16.82777 -15.92963 -15.26426 -14.80319 -14.18046 -13.47582 -13.15138 -12.93115 -12.67867 -12.47175 -11.87022 -11.72076 -11.61747 -11.01312 -10.68009 -10.46748 -10.19680 -9.70230 -9.64090 -8.93185 -8.70520 -6.84012 -6.18747 -4.20248 2.34645 2.89982 3.20061 3.28810 3.29623 3.47660 4.14850 4.29417 5.08982 5.17206 5.34662 5.68139 5.78782 5.93186 5.98658 6.00820 6.10360 6.29842 6.53729 6.63885 6.72209 6.87248 7.43427 7.50422 8.03466 8.36145 8.69810 8.87118 9.39699 10.94260 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.051414 B = 0.009940 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.467708 B = 2816.296551 C = 2992.391117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.011 3.989 3 C -0.138 4.138 4 O -0.216 6.216 5 C 0.485 3.515 6 N -0.559 5.559 7 C 0.118 3.882 8 C 0.223 3.777 9 C -0.542 4.542 10 H 0.077 0.923 11 C 0.075 3.925 12 N -0.892 5.892 13 Si 0.874 3.126 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.264 1.264 17 N -0.567 5.567 18 H 0.067 0.933 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.202 0.798 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 -0.352 7.147 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 C -0.210 4.210 4 O -0.104 6.104 5 C 0.187 3.813 6 N -0.285 5.285 7 C -0.024 4.024 8 C 0.102 3.898 9 C -0.580 4.580 10 H 0.096 0.904 11 C -0.128 4.128 12 N -0.530 5.530 13 Si 0.701 3.299 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.189 1.189 17 N -0.309 5.309 18 H 0.086 0.914 19 H 0.087 0.913 20 H 0.089 0.911 21 H 0.218 0.782 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.033 -0.939 7.037 11.489 hybrid contribution 0.996 1.162 0.477 1.603 sum -8.037 0.222 7.514 11.005 Atomic orbital electron populations 1.19996 0.87544 1.02630 1.02045 1.21384 0.97152 0.88607 1.03698 1.24052 0.79704 1.00075 1.17170 1.84494 1.30406 1.21906 1.73559 1.21612 0.88076 0.78214 0.93354 1.45613 1.01737 1.03545 1.77562 1.21506 1.02929 0.77330 1.00589 1.19794 0.77289 0.94182 0.98489 1.21429 1.02238 1.43070 0.91304 0.90449 1.24864 0.97533 0.94741 0.95651 1.69894 1.20247 1.44165 1.18704 0.86876 0.81132 0.78931 0.82991 1.19800 1.20763 1.18893 1.70709 0.98049 1.29750 1.32404 0.91396 0.91298 0.91134 0.78158 0.93807 0.91186 0.90422 0.94507 0.94905 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.42 36.01 0.38 -0.44 15 2 C 0.01 0.19 7.10 -82.78 -0.59 -0.40 15 3 C -0.14 -2.47 12.07 29.27 0.35 -2.11 15 4 O -0.22 -4.85 10.22 3.68 0.04 -4.82 15 5 C 0.48 10.94 8.43 -87.00 -0.73 10.20 15 6 N -0.56 -12.40 2.95 -185.31 -0.55 -12.95 15 7 C 0.12 2.12 10.57 59.85 0.63 2.75 15 8 C 0.22 5.38 4.39 -5.19 -0.02 5.35 15 9 C -0.54 -15.33 9.94 -34.44 -0.34 -15.68 15 10 H 0.08 2.45 8.06 -52.49 -0.42 2.02 15 11 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 12 N -0.89 -27.02 13.96 55.43 0.77 -26.25 15 13 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 15 14 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.26 -6.04 6.53 56.52 0.37 -5.67 15 17 N -0.57 -11.85 10.62 -10.67 -0.11 -11.97 15 18 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 19 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 21 H 0.20 2.65 8.06 -52.49 -0.42 2.23 15 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.07 1.23 7.64 -51.93 -0.40 0.83 15 24 H 0.08 1.34 8.07 -51.93 -0.42 0.92 15 25 H 0.04 0.82 7.51 -51.93 -0.39 0.43 15 26 H 0.03 0.81 6.74 -51.93 -0.35 0.46 15 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 LS Contribution 241.33 15.07 3.64 3.64 Total: -1.00 -32.40 241.33 -4.56 -36.96 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -3.26 Total: -2.42 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.42 Total: 1.74 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.11 Total: -51.16 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.04 Total: -4.82 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.40 -4.56 -36.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306371908.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.524 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds