Wall clock time and date at job start Mon Mar 30 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34093 * 126.09798 * 2 1 4 4 O 1.35115 * 107.27391 * 179.78064 * 3 2 1 5 5 C 1.34208 * 107.75094 * 0.38446 * 4 3 2 6 6 N 1.38155 * 125.71173 * 179.87079 * 5 4 3 7 7 C 1.46507 * 119.99633 * 179.69055 * 6 5 4 8 8 C 1.46493 * 120.00301 * 359.69660 * 6 5 4 9 9 C 1.50706 * 109.47128 * 269.99635 * 8 6 5 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00436 * 179.72498 * 9 8 6 12 12 N 1.31514 * 120.00481 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99745 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00365 * 13 11 9 15 15 H 1.48506 * 109.47294 * 210.00213 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00116 * 13 11 9 17 17 N 1.31051 * 108.57222 * 359.60810 * 5 4 3 18 18 H 1.09000 * 109.47132 * 270.00043 * 1 2 3 19 19 H 1.08998 * 109.47393 * 29.99897 * 1 2 3 20 20 H 1.09002 * 109.46639 * 150.00403 * 1 2 3 21 21 H 1.08001 * 126.36502 * 0.04120 * 3 2 1 22 22 H 1.09004 * 109.47155 * 270.00229 * 7 6 5 23 23 H 1.08993 * 109.47381 * 30.00388 * 7 6 5 24 24 H 1.09002 * 109.46817 * 150.00626 * 7 6 5 25 25 H 1.09001 * 109.47786 * 149.99908 * 8 6 5 26 26 H 1.08998 * 109.47558 * 29.99771 * 8 6 5 27 27 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2971 1.0835 0.0000 4 8 3.5759 0.6475 0.0049 5 6 3.5508 -0.6943 -0.0007 6 7 4.6573 -1.5216 -0.0008 7 6 4.4842 -2.9764 -0.0005 8 6 6.0037 -0.9442 -0.0011 9 6 6.4651 -0.7464 -1.4220 10 1 5.8201 -1.0236 -2.2427 11 6 7.7086 -0.2069 -1.6743 12 7 8.1111 -0.0339 -2.9144 13 14 8.8211 0.2796 -0.2548 14 1 9.6737 -0.8757 0.1243 15 1 9.6828 1.4162 -0.6682 16 1 7.9912 0.6850 0.9080 17 7 2.3010 -1.0884 -0.0004 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3633 -0.8901 -0.5138 21 1 1.9716 2.1133 0.0006 22 1 4.4414 -3.3370 1.0273 23 1 3.5575 -3.2321 -0.5141 24 1 5.3249 -3.4424 -0.5143 25 1 6.6885 -1.6188 0.5127 26 1 5.9869 0.0170 0.5126 27 1 8.9857 0.3460 -3.0918 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306371908.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:55 Heat of formation + Delta-G solvation = 9.536513 kcal Electronic energy + Delta-G solvation = -12238.113126 eV Core-core repulsion = 9997.229737 eV Total energy + Delta-G solvation = -2240.883388 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.91739 -38.00564 -35.89577 -34.76086 -32.00417 -30.24906 -28.42723 -26.63030 -24.47764 -22.19237 -21.37922 -19.19288 -18.43968 -17.56027 -16.83653 -16.54465 -15.93333 -14.99220 -14.73413 -14.34880 -14.01402 -13.97268 -13.56098 -13.29209 -12.97749 -12.71238 -12.46763 -12.15791 -11.87521 -11.76381 -11.24920 -10.85702 -10.49919 -8.42322 -8.35384 -6.45523 0.85361 1.33442 1.35350 1.42036 1.49106 1.94958 2.29758 2.64965 2.96525 3.79459 4.11485 4.30902 4.57841 4.61861 4.67754 4.79142 4.87622 4.88756 5.00424 5.04244 5.16505 5.36142 5.55971 5.80305 6.23456 6.42011 6.57469 7.10655 7.22847 8.80255 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.051414 B = 0.009940 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.467708 B = 2816.296551 C = 2992.391117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.003 4.003 3 C -0.142 4.142 4 O -0.246 6.246 5 C 0.453 3.547 6 N -0.573 5.573 7 C 0.118 3.882 8 C 0.234 3.766 9 C -0.551 4.551 10 H 0.024 0.976 11 C 0.016 3.984 12 N -0.944 5.944 13 Si 0.952 3.048 14 H -0.253 1.253 15 H -0.281 1.281 16 H -0.248 1.248 17 N -0.574 5.574 18 H 0.087 0.913 19 H 0.097 0.903 20 H 0.068 0.932 21 H 0.244 0.756 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.028 0.972 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.751 0.114 9.123 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.122 4.122 3 C -0.212 4.212 4 O -0.134 6.134 5 C 0.156 3.844 6 N -0.299 5.299 7 C -0.023 4.023 8 C 0.112 3.888 9 C -0.589 4.589 10 H 0.042 0.958 11 C -0.183 4.183 12 N -0.583 5.583 13 Si 0.773 3.227 14 H -0.177 1.177 15 H -0.206 1.206 16 H -0.171 1.171 17 N -0.317 5.317 18 H 0.106 0.894 19 H 0.116 0.884 20 H 0.087 0.913 21 H 0.260 0.740 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.648 -0.491 9.020 13.217 hybrid contribution 1.016 1.030 -0.234 1.466 sum -8.631 0.539 8.786 12.328 Atomic orbital electron populations 1.20168 0.83762 1.04026 1.03749 1.22245 0.99415 0.87621 1.02891 1.25016 0.78210 1.02117 1.15816 1.84472 1.32881 1.22192 1.73857 1.21980 0.88733 0.78506 0.95187 1.45681 1.01116 1.04825 1.78284 1.21667 1.02858 0.75395 1.02386 1.19538 0.78911 0.94759 0.95577 1.21607 1.01862 1.43170 0.92290 0.95758 1.25887 0.99265 0.94333 0.98830 1.70056 1.21154 1.45500 1.21572 0.85660 0.78763 0.79097 0.79148 1.17671 1.20605 1.17148 1.70714 0.97854 1.31217 1.31933 0.89407 0.88406 0.91254 0.73959 0.90935 0.91386 0.90304 0.91998 0.95388 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.32 10.42 71.24 0.74 -0.57 15 2 C 0.00 -0.10 7.10 41.17 0.29 0.19 15 3 C -0.14 -4.82 12.07 66.87 0.81 -4.01 15 4 O -0.25 -11.00 10.22 -9.76 -0.10 -11.10 15 5 C 0.45 20.46 8.43 179.08 1.51 21.97 15 6 N -0.57 -25.42 2.95 -850.65 -2.51 -27.93 15 7 C 0.12 4.14 10.57 127.77 1.35 5.49 15 8 C 0.23 11.18 4.39 85.64 0.38 11.56 15 9 C -0.55 -31.97 9.94 25.60 0.25 -31.72 15 10 H 0.02 1.61 8.06 -2.91 -0.02 1.59 15 11 C 0.02 0.90 5.47 84.65 0.46 1.36 15 12 N -0.94 -58.59 13.96 21.45 0.30 -58.29 15 13 Si 0.95 42.25 27.47 68.60 1.88 44.14 15 14 H -0.25 -10.38 7.11 99.48 0.71 -9.67 15 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 16 H -0.25 -10.28 6.53 99.48 0.65 -9.63 15 17 N -0.57 -23.65 10.62 -301.94 -3.21 -26.86 15 18 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 19 H 0.10 1.59 8.14 -2.39 -0.02 1.57 15 20 H 0.07 1.55 8.14 -2.39 -0.02 1.53 15 21 H 0.24 5.64 8.06 -2.91 -0.02 5.62 15 22 H 0.07 2.12 8.14 -2.38 -0.02 2.10 15 23 H 0.07 2.38 7.64 -2.39 -0.02 2.36 15 24 H 0.08 2.70 8.07 -2.39 -0.02 2.68 15 25 H 0.06 2.64 7.51 -2.39 -0.02 2.63 15 26 H 0.03 1.36 6.74 -2.39 -0.02 1.35 15 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 Total: -1.00 -72.20 241.33 3.26 -68.94 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.10 Total: 6.84 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.80 Total: 4.27 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -5.42 Total: -113.08 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.10 Total: -11.10 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.14 kcal Total: -72.20 3.26 -68.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306371908.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.474 kcal (2) G-P(sol) polarization free energy of solvation -72.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds