Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46966 * 2 1 4 4 C 1.36881 * 126.39751 * 265.02202 * 3 2 1 5 5 C 1.34668 * 106.81875 * 180.02562 * 4 3 2 6 6 N 1.34134 * 108.01972 * 359.97438 * 5 4 3 7 7 C 1.30501 * 109.25535 * 0.02562 * 6 5 4 8 8 C 1.50692 * 125.64779 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.46963 * 165.02619 * 8 7 6 10 10 O 1.42902 * 109.47497 * 45.02693 * 8 7 6 11 11 C 1.50697 * 109.47302 * 285.02580 * 8 7 6 12 12 H 1.07999 * 120.00468 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00059 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00330 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00003 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.46967 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47127 * 120.00059 * 15 13 11 18 18 H 1.48498 * 109.47200 * 239.99612 * 15 13 11 19 19 H 1.09001 * 109.46564 * 60.00062 * 1 2 3 20 20 H 1.08996 * 109.46933 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47074 * 299.99915 * 1 2 3 22 22 H 1.08995 * 109.47074 * 240.00085 * 2 1 3 23 23 H 1.08998 * 109.47183 * 120.00352 * 2 1 3 24 24 H 1.08003 * 126.59103 * 359.97438 * 4 3 2 25 25 H 1.08001 * 125.99672 * 180.02562 * 5 4 3 26 26 H 0.96700 * 113.99791 * 300.00286 * 10 8 7 27 27 H 0.96997 * 120.00469 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3792 2.1151 -1.0976 5 6 2.7657 3.3243 -0.6480 6 7 2.6437 3.3287 0.6878 7 6 2.1967 2.1681 1.0829 8 6 1.9249 1.7715 2.5111 9 1 1.3199 0.8650 2.5276 10 8 1.2219 2.8253 3.1726 11 6 3.2306 1.5171 3.2191 12 1 4.1641 1.6306 2.6879 13 6 3.2337 1.1382 4.5448 14 7 2.0971 0.9993 5.1916 15 14 4.8523 0.8220 5.4221 16 1 5.9779 1.0451 4.4796 17 1 4.9799 1.7495 6.5749 18 1 4.8856 -0.5804 5.9092 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5139 0.8899 24 1 2.3588 1.7872 -2.1265 25 1 3.1124 4.1466 -1.2563 26 1 1.7021 3.6643 3.1958 27 1 2.0992 0.7324 6.1242 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306801570.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = 4.452939 kcal Electronic energy + Delta-G solvation = -12508.834224 eV Core-core repulsion = 10267.730395 eV Total energy + Delta-G solvation = -2241.103829 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.30579 -35.45545 -34.41165 -32.17215 -29.64232 -29.26947 -26.46567 -23.53745 -22.75965 -20.56310 -18.91443 -17.02669 -16.62831 -14.69180 -14.66232 -14.50761 -14.19502 -13.41536 -13.21354 -12.79124 -12.44274 -12.17101 -11.75741 -11.30059 -11.03627 -10.95533 -10.91358 -10.18514 -9.43560 -9.14810 -8.90827 -8.67410 -8.43073 -7.55864 -6.06996 -4.24688 2.78340 3.26138 3.34688 3.39623 3.47025 3.97805 4.39467 5.00070 5.19317 5.28999 5.35952 5.51317 5.57817 5.80164 5.94490 6.09439 6.26609 6.29054 6.35711 6.97965 7.30554 7.60750 7.80248 7.91488 8.08457 8.77420 8.98463 9.32721 9.50816 10.96827 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.039703 B = 0.012063 C = 0.011238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.070575 B = 2320.526499 C = 2490.982858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 N -0.458 5.458 4 C -0.091 4.091 5 C -0.036 4.036 6 N -0.502 5.502 7 C 0.230 3.770 8 C 0.308 3.692 9 H 0.069 0.931 10 O -0.554 6.554 11 C -0.557 4.557 12 H 0.059 0.941 13 C 0.079 3.921 14 N -0.860 5.860 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.283 1.283 19 H 0.056 0.944 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.161 0.839 25 H 0.158 0.842 26 H 0.360 0.640 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -2.654 -9.446 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 N -0.142 5.142 4 C -0.223 4.223 5 C -0.184 4.184 6 N -0.221 5.221 7 C -0.034 4.034 8 C 0.248 3.752 9 H 0.086 0.914 10 O -0.356 6.356 11 C -0.596 4.596 12 H 0.078 0.922 13 C -0.127 4.127 14 N -0.496 5.496 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.209 1.209 19 H 0.075 0.925 20 H 0.090 0.910 21 H 0.088 0.912 22 H 0.101 0.899 23 H 0.117 0.883 24 H 0.178 0.822 25 H 0.175 0.825 26 H 0.206 0.794 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.623 -2.654 -8.693 9.232 hybrid contribution 1.198 -0.474 -0.384 1.344 sum -0.425 -3.128 -9.077 9.610 Atomic orbital electron populations 1.22145 0.94572 1.02619 1.03207 1.21760 0.95347 0.80781 1.04283 1.45530 1.49239 1.12470 1.06950 1.22419 1.12717 0.94840 0.92364 1.22177 1.07186 0.96922 0.92144 1.70200 1.19999 1.20946 1.10920 1.25620 0.98177 0.86417 0.93196 1.17910 0.93122 0.87291 0.76876 0.91369 1.86500 1.47787 1.22246 1.79030 1.21484 0.92250 1.49434 0.96423 0.92225 1.25020 0.96477 0.93964 0.97234 1.70072 1.25086 1.44226 1.10218 0.86491 0.83729 0.77817 0.79680 1.19633 1.20628 1.20853 0.92510 0.90992 0.91153 0.89940 0.88323 0.82177 0.82481 0.79407 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 15 2 C 0.10 1.55 6.33 -4.04 -0.03 1.53 15 3 N -0.46 -8.88 2.75 -113.91 -0.31 -9.20 15 4 C -0.09 -1.60 11.58 -16.56 -0.19 -1.79 15 5 C -0.04 -0.70 11.87 -17.81 -0.21 -0.91 15 6 N -0.50 -11.85 11.14 -10.82 -0.12 -11.97 15 7 C 0.23 5.40 6.71 -155.42 -1.04 4.36 15 8 C 0.31 8.04 3.12 -29.04 -0.09 7.95 15 9 H 0.07 1.82 7.10 -51.93 -0.37 1.45 15 10 O -0.55 -15.01 12.72 -35.23 -0.45 -15.46 15 11 C -0.56 -15.59 8.75 -34.44 -0.30 -15.89 15 12 H 0.06 1.72 7.74 -52.49 -0.41 1.31 15 13 C 0.08 2.21 5.40 -17.82 -0.10 2.11 15 14 N -0.86 -24.88 12.84 55.43 0.71 -24.17 15 15 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 15 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.07 1.15 8.05 -51.93 -0.42 0.73 15 22 H 0.08 1.00 8.13 -51.93 -0.42 0.58 15 23 H 0.10 1.62 7.58 -51.93 -0.39 1.23 15 24 H 0.16 2.12 8.06 -52.48 -0.42 1.70 15 25 H 0.16 2.51 8.06 -52.49 -0.42 2.09 15 26 H 0.36 9.23 8.93 45.56 0.41 9.63 15 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 242.53 15.07 3.65 3.65 Total: -1.00 -32.14 242.53 -5.54 -37.69 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -2.43 Total: 7.77 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.58 Total: -4.57 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.28 Total: -45.33 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.45 Total: -15.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.14 -5.54 -37.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306801570.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.138 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds