Wall clock time and date at job start Mon Mar 30 2020 01:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86793 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47423 * 299.99964 * 3 2 1 6 6 H 1.48502 * 109.47280 * 59.99679 * 3 2 1 7 7 C 1.38756 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99348 * 180.02562 * 7 2 1 9 9 O 1.34912 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00123 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00115 * 179.97438 * 10 9 7 13 13 H 1.09008 * 109.35609 * 299.72393 * 12 10 9 14 14 C 1.50074 * 109.35817 * 59.30663 * 12 10 9 15 15 C 1.29435 * 124.07004 * 137.33871 * 14 12 10 16 16 C 1.50074 * 124.08192 * 359.53341 * 15 14 12 17 17 C 1.53028 * 110.14333 * 17.12996 * 16 15 14 18 18 C 1.53022 * 109.36022 * 180.02562 * 12 10 9 19 19 H 0.97005 * 119.99363 * 0.02562 * 1 2 3 20 20 H 1.07992 * 117.96381 * 317.32126 * 14 12 10 21 21 H 1.07998 * 117.95963 * 179.51314 * 15 14 12 22 22 H 1.08997 * 109.36065 * 256.92901 * 16 15 14 23 23 H 1.08997 * 109.24897 * 137.26268 * 16 15 14 24 24 H 1.08997 * 109.64049 * 190.88133 * 17 16 15 25 25 H 1.09004 * 109.81166 * 70.35008 * 17 16 15 26 26 H 1.09003 * 109.63790 * 310.04078 * 18 12 10 27 27 H 1.08996 * 109.64177 * 70.45771 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3462 0.0006 5 1 1.8898 2.3964 -1.2125 6 1 1.8897 2.3964 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4332 0.0001 12 6 1.3809 -4.8393 0.0011 13 1 0.7628 -4.9295 0.8945 14 6 0.5106 -4.9547 -1.2161 15 6 0.4279 -6.0175 -1.9502 16 6 1.1981 -7.2795 -1.6927 17 6 1.7357 -7.2858 -0.2600 18 6 2.4369 -5.9467 0.0016 19 1 -0.4849 0.8401 -0.0004 20 1 -0.0838 -4.0978 -1.4967 21 1 -0.2371 -5.9948 -2.8009 22 1 2.0321 -7.3428 -2.3917 23 1 0.5409 -8.1372 -1.8357 24 1 2.4479 -8.1020 -0.1395 25 1 0.9121 -7.4113 0.4430 26 1 3.1677 -5.7564 -0.7844 27 1 2.9382 -5.9745 0.9691 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306955794.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:47 Heat of formation + Delta-G solvation = -81.911630 kcal Electronic energy + Delta-G solvation = -12223.937907 eV Core-core repulsion = 9946.796278 eV Total energy + Delta-G solvation = -2277.141629 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.39662 -37.54293 -35.03050 -32.12568 -30.79112 -30.64734 -25.60960 -23.67803 -21.95357 -20.00004 -17.71855 -17.54394 -16.62991 -15.75205 -14.65264 -14.35115 -14.31110 -13.73943 -12.75826 -12.65150 -12.44901 -12.13612 -12.04691 -11.55879 -11.15289 -10.68900 -10.43328 -10.37272 -10.35854 -9.92132 -9.74302 -9.16838 -8.54509 -8.52931 -6.37717 -4.05172 2.56731 3.12959 3.21197 3.28905 3.61217 3.99152 4.61225 4.95305 5.03529 5.17766 5.28574 5.50572 5.56462 5.77917 5.80520 5.93489 6.02228 6.11926 6.22199 6.54696 6.63208 6.84923 7.00715 7.22835 7.44178 7.99596 8.76130 9.11540 9.91337 10.80541 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.072017 B = 0.008782 C = 0.008197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.704847 B = 3187.488588 C = 3415.220160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.381 4.381 8 H 0.095 0.905 9 O -0.214 6.214 10 C 0.406 3.594 11 O -0.555 6.555 12 C -0.043 4.043 13 H 0.104 0.896 14 C -0.128 4.128 15 C -0.169 4.169 16 C -0.089 4.089 17 C -0.119 4.119 18 C -0.101 4.101 19 H 0.268 0.732 20 H 0.117 0.883 21 H 0.104 0.896 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -10.314 -1.539 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.458 4.458 8 H 0.113 0.887 9 O -0.121 6.121 10 C 0.252 3.748 11 O -0.452 6.452 12 C -0.062 4.062 13 H 0.121 0.879 14 C -0.146 4.146 15 C -0.187 4.187 16 C -0.126 4.126 17 C -0.157 4.157 18 C -0.139 4.139 19 H 0.078 0.922 20 H 0.135 0.865 21 H 0.122 0.878 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.149 -10.117 -1.543 10.235 hybrid contribution 0.282 0.940 -0.035 0.982 sum 0.431 -9.177 -1.578 9.321 Atomic orbital electron populations 1.70009 1.05971 1.27462 1.46932 1.25324 0.95803 0.98815 0.96309 0.85632 0.79483 0.80170 0.78080 1.18977 1.20205 1.20203 1.21278 0.92382 0.79990 1.52130 0.88744 1.83878 1.39350 1.13325 1.75532 1.23034 0.86538 0.87011 0.78219 1.90539 1.15735 1.87990 1.50974 1.19717 0.96630 0.90925 0.98893 0.87871 1.22017 0.98461 0.98596 0.95519 1.21969 1.01315 0.95227 1.00157 1.20438 0.99063 0.95998 0.97062 1.21628 1.00061 0.97313 0.96666 1.21446 0.96942 0.92356 1.03128 0.92208 0.86509 0.87824 0.91143 0.91482 0.91652 0.91749 0.90734 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.67 55.48 0.76 -24.99 15 2 C 0.04 1.18 5.49 -17.52 -0.10 1.08 15 3 Si 0.94 21.66 29.55 -169.99 -5.02 16.64 15 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.38 -11.54 9.64 30.92 0.30 -11.25 15 8 H 0.09 2.89 6.86 -52.48 -0.36 2.53 15 9 O -0.21 -6.26 9.61 -20.69 -0.20 -6.46 15 10 C 0.41 10.36 7.18 36.01 0.26 10.62 15 11 O -0.56 -15.38 15.04 -19.05 -0.29 -15.66 15 12 C -0.04 -0.83 2.87 -93.21 -0.27 -1.09 15 13 H 0.10 1.85 8.14 -51.92 -0.42 1.42 15 14 C -0.13 -2.30 8.96 -35.89 -0.32 -2.62 15 15 C -0.17 -2.50 9.80 -35.89 -0.35 -2.85 15 16 C -0.09 -1.10 6.12 -28.17 -0.17 -1.27 15 17 C -0.12 -1.51 6.01 -26.51 -0.16 -1.67 15 18 C -0.10 -1.67 4.74 -26.51 -0.13 -1.79 15 19 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 20 H 0.12 2.30 8.01 -52.49 -0.42 1.88 15 21 H 0.10 1.37 8.06 -52.49 -0.42 0.94 15 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.06 0.77 8.13 -51.93 -0.42 0.35 15 26 H 0.07 1.34 7.75 -51.93 -0.40 0.94 15 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 LS Contribution 237.83 15.07 3.58 3.58 Total: -1.00 -32.81 237.83 -5.38 -38.19 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.28 Total: -0.45 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.94 Total: -10.85 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.76 Total: -24.99 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.49 Total: -22.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.81 -5.38 -38.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306955794.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.722 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds